AAH43814 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AAH43814 T59453_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPAB
M301_0.6 		Homo sapiens Sequence logo not available ACAAAGACAAA SELEX
Cook et al.(2011)
39_12419250 		0.886
HNRNPAB
M210_0.6 		Tetraodon nigroviridis WRGWUAG RNAcompete
Ray et al.(2013)
RNCMPT00245 		0.786
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAH43814 RRM 66 135
AAH43814 RRM 150 219

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

123 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH68788 Xenopus laevis AAH68788 N 0.700
AAH74212 Xenopus laevis AAH74212 I 0.964
AAH97855 Xenopus laevis AAH97855 I 0.761
AAU25946 Xenopus laevis AAU25946 I 0.761
ABV54637 Xenopus laevis ABV54637 I 0.964
Ame_R000242 Ailuropoda melanoleuca Ame_R000242 I 0.714
Ame_R000243 Ailuropoda melanoleuca Ame_R000243 I 0.734
Ame_R012484 Ailuropoda melanoleuca Ame_R012484 I 0.879
CBF67671 Xenopus laevis CBF67671 N 0.700
CBU92545 Xenopus laevis CBU92545 N 0.700
HNRNPD Anolis carolinensis ENSACAG00000010342 I 0.741
HNRNPAB Anolis carolinensis ENSACAG00000016946 I 0.914
Q3ZC44_BOVIN Bos taurus ENSBTAG00000013627 I 0.879
A5D9H5_BOVIN Bos taurus ENSBTAG00000013952 I 0.739
A4IF81_BOVIN Bos taurus ENSBTAG00000014804 I 0.714
HNRNPAB Canis familiaris ENSCAFG00000000241 I 0.871
ENSCAFG00000008940 Canis familiaris ENSCAFG00000008940 I 0.714
HNRNPD Canis familiaris ENSCAFG00000025045 I 0.739
HNRNPD Choloepus hoffmanni ENSCHOG00000000045 I 0.727
ENSCHOG00000000160 Choloepus hoffmanni ENSCHOG00000000160 I 0.714
LOC100404672 Callithrix jacchus ENSCJAG00000005154 I 0.714
LOC100390818 Callithrix jacchus ENSCJAG00000012235 I 0.793
LOC100400250 Callithrix jacchus ENSCJAG00000015165 I 0.739
LOC100412686 Callithrix jacchus ENSCJAG00000015197 I 0.714
LOC100397832 Callithrix jacchus ENSCJAG00000031195 I 0.734
ENSCJAG00000032456 Callithrix jacchus ENSCJAG00000032456 I 0.850
ENSCPOG00000015619 Cavia porcellus ENSCPOG00000015619 I 0.714
HNRNPAB Cavia porcellus ENSCPOG00000025972 I 0.879
hnrnpab Danio rerio ENSDARG00000007960 I 0.836
HNRNPAB Danio rerio ENSDARG00000017568 I 0.836
hnrnpd Danio rerio ENSDARG00000059246 I 0.718
ENSDNOG00000003887 Dasypus novemcinctus ENSDNOG00000003887 I 0.714
HNRNPAB Dasypus novemcinctus ENSDNOG00000013820 I 0.886
ENSDORG00000000968 Dipodomys ordii ENSDORG00000000968 I 0.714
Hnrnpd Dipodomys ordii ENSDORG00000012507 I 0.727
LOC100060733 Equus caballus ENSECAG00000009344 I 0.739
ENSECAG00000018242 Equus caballus ENSECAG00000018242 I 0.879
Q6X9Z3_HORSE Equus caballus ENSECAG00000022692 I 0.714
HNRPDL Erinaceus europaeus ENSEEUG00000004301 I 0.700
HNRNPD Erinaceus europaeus ENSEEUG00000007552 I 0.730
HNRNPD Echinops telfairi ENSETEG00000016709 I 0.739
HNRNPD Homo sapiens ENSG00000138668 I 0.739
HNRPDL Homo sapiens ENSG00000152795 I 0.714
HNRNPAB Homo sapiens ENSG00000197451 D 0.886
HNRNPD Gasterosteus aculeatus ENSGACG00000015669 N 0.706
HNRNPAB Gasterosteus aculeatus ENSGACG00000018116 I 0.807
HNRNPAB Gasterosteus aculeatus ENSGACG00000020830 I 0.800
Q5ZIH1_CHICK Gallus gallus ENSGALG00000011184 I 0.734
Q90626_CHICK Gallus gallus ENSGALG00000014381 I 0.907
HNRDL_CHICK Gallus gallus ENSGALG00000023199 I 0.707
HNRPDL Gorilla gorilla ENSGGOG00000003714 I 0.714
HNRNPAB Gorilla gorilla ENSGGOG00000011692 I 0.886
HNRNPD Gorilla gorilla ENSGGOG00000026760 I 0.739
ENSGGOG00000028444 Gorilla gorilla ENSGGOG00000028444 I 0.800
HNRNPAB Loxodonta africana ENSLAFG00000001189 I 0.879
ENSLAFG00000008612 Loxodonta africana ENSLAFG00000008612 I 0.714
HNRNPD Loxodonta africana ENSLAFG00000016483 I 0.734
HNRNPAB Macropus eugenii ENSMEUG00000007909 I 0.900
ENSMEUG00000011454 Macropus eugenii ENSMEUG00000011454 I 0.714
HNRNPAB Meleagris gallopavo ENSMGAG00000007727 I 0.907
HNRPDL Meleagris gallopavo ENSMGAG00000008033 I 0.707
HNRNPD Meleagris gallopavo ENSMGAG00000008051 I 0.734
HNRPDL Microcebus murinus ENSMICG00000001445 I 0.714
HNRNPD Microcebus murinus ENSMICG00000010984 I 0.734
HNRNPD Myotis lucifugus ENSMLUG00000010628 I 0.725
HNRPDL Myotis lucifugus ENSMLUG00000014452 I 0.707
HNRNPAB Macaca mulatta ENSMMUG00000003996 I 0.879
HNRNPD Macaca mulatta ENSMMUG00000014030 I 0.739
HNRPDL Macaca mulatta ENSMMUG00000015777 I 0.714
HNRNPAB Monodelphis domestica ENSMODG00000004217 I 0.900
ENSMODG00000006825 Monodelphis domestica ENSMODG00000006825 I 0.707
HNRNPD Monodelphis domestica ENSMODG00000011898 I 0.739
ENSMODG00000011916 Monodelphis domestica ENSMODG00000011916 I 0.714
Hnrnpd Mus musculus ENSMUSG00000000568 I 0.739
Hnrnpab Mus musculus ENSMUSG00000020358 I 0.879
Hnrpdl Mus musculus ENSMUSG00000029328 I 0.714
HNRNPD Ornithorhynchus anatinus ENSOANG00000001932 I 0.741
HNRPDL Ornithorhynchus anatinus ENSOANG00000004651 I 0.714
HNRNPAB Ornithorhynchus anatinus ENSOANG00000004998 I 0.907
HNRNPD Oryctolagus cuniculus ENSOCUG00000001357 I 0.734
HNRPDL Oryctolagus cuniculus ENSOCUG00000013805 I 0.714
HNRNPAB Oryctolagus cuniculus ENSOCUG00000026424 I 0.866
HNRNPAB Ochotona princeps ENSOPRG00000002546 I 0.886
HNRPDL Ochotona princeps ENSOPRG00000007178 I 0.714
HNRNPD Ochotona princeps ENSOPRG00000009336 I 0.739
HNRNPD Oryzias latipes ENSORLG00000001833 I 0.711
HNRNPAB Oryzias latipes ENSORLG00000005327 I 0.807
HNRNPAB Oryzias latipes ENSORLG00000015501 I 0.780
HNRNPD Procavia capensis ENSPCAG00000002182 I 0.704
HNRNPAB Procavia capensis ENSPCAG00000006760 I 0.871
HNRPDL Procavia capensis ENSPCAG00000011543 I 0.714
ENSPPYG00000014885 Pongo pygmaeus ENSPPYG00000014885 I 0.739
ENSPPYG00000014886 Pongo pygmaeus ENSPPYG00000014886 I 0.714
ENSPPYG00000016107 Pongo pygmaeus ENSPPYG00000016107 I 0.858
HNRNPD Pan troglodytes ENSPTRG00000016215 I 0.739
HNRPDL Pan troglodytes ENSPTRG00000016217 I 0.714
XR_022913.1 Pan troglodytes ENSPTRG00000017601 I 0.886
HNRNPD Pteropus vampyrus ENSPVAG00000000003 I 0.739
HNRNPAB Pteropus vampyrus ENSPVAG00000016742 I 0.850
D3ZN89_RAT Rattus norvegicus ENSRNOG00000002270 I 0.714
Hnrpd Rattus norvegicus ENSRNOG00000002292 I 0.732
Hnrnpab Rattus norvegicus ENSRNOG00000003645 I 0.879
HNRNPD Sorex araneus ENSSARG00000006883 I 0.730
HNRNPAB Sus scrofa ENSSSCG00000001932 I 0.759
HNRNPD Spermophilus tridecemlineatus ENSSTOG00000013970 I 0.739
HNRPDL Spermophilus tridecemlineatus ENSSTOG00000013979 I 0.714
HNRPDL Tupaia belangeri ENSTBEG00000002817 I 0.714
HNRNPAB Taeniopygia guttata ENSTGUG00000001168 I 0.907
HNRPDL Taeniopygia guttata ENSTGUG00000002850 I 0.707
HNRNPD Taeniopygia guttata ENSTGUG00000002858 I 0.739
HNRNPAB Tetraodon nigroviridis ENSTNIG00000007596 I 0.779
HNRNPAB Tetraodon nigroviridis ENSTNIG00000010512 D 0.786
HNRNPD Tetraodon nigroviridis ENSTNIG00000013499 I 0.730
HNRNPAB Takifugu rubripes ENSTRUG00000000612 I 0.793
HNRNPAB Takifugu rubripes ENSTRUG00000008411 I 0.779
HNRNPD Tarsius syrichta ENSTSYG00000010395 I 0.734
HNRPDL Tursiops truncatus ENSTTRG00000001793 I 0.714
HNRNPD Tursiops truncatus ENSTTRG00000007592 I 0.739
HNRNPD Vicugna pacos ENSVPAG00000004374 I 0.734
hnrnpab Xenopus tropicalis ENSXETG00000003836 I 0.964
hnrnpd Xenopus tropicalis ENSXETG00000012569 I 0.768
hnrpdl Xenopus tropicalis ENSXETG00000023026 I 0.707
Q6NU14 Xenopus laevis Q6NU14 N 0.700