CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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FGSG_11902
(
Fusarium graminearum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FGSG_11902
T29262_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
CADANIAG00004740
M241_0.6
Aspergillus nidulans
UACUAMK
RNAcompete
Ray et al.(2013)
RNCMPT00287
0.803
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FGSG_11902T0
RRM
215
285
LFVGNLAGETTDDALLKAFSRWQSVQKARVIRDKRTSKSKGYGFVSFSDADDFFQAAKEMNGKYIQSHPVT
Links
Other
RRM
family RBPs
Other
Fusarium graminearum
RBPs
48 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
NCL
Homo sapiens
ENSG00000115053
D
0.000
Ame_R005385
Ailuropoda melanoleuca
Ame_R005385
I
0.000
NCL
Macaca mulatta
ENSMMUG00000018094
I
0.000
NCL
Monodelphis domestica
ENSMODG00000002470
I
0.000
NCL
Ornithorhynchus anatinus
ENSOANG00000008732
I
0.000
NCL
Oryctolagus cuniculus
ENSOCUG00000004312
I
0.000
NCL
Pan troglodytes
ENSPTRG00000013025
I
0.000
NCL
Pteropus vampyrus
ENSPVAG00000000297
I
0.000
NCL
Tursiops truncatus
ENSTTRG00000009094
I
0.000
NCL
Meleagris gallopavo
ENSMGAG00000008147
I
0.000
NCL
Macropus eugenii
ENSMEUG00000012335
I
0.000
NCL
Bos taurus
ENSBTAG00000016174
I
0.000
ENSBTAG00000026909
Bos taurus
ENSBTAG00000026909
I
0.000
NCL
Canis familiaris
ENSCAFG00000011037
I
0.000
LOC100395223
Callithrix jacchus
ENSCJAG00000013538
I
0.000
Q6X9Z0_HORSE
Equus caballus
ENSECAG00000021868
I
0.000
NUCL_CHICK
Gallus gallus
ENSGALG00000007705
I
0.000
NCL
Gorilla gorilla
ENSGGOG00000004300
I
0.000
NCL
Taeniopygia guttata
ENSTGUG00000009782
N
0.000
NCL
Anolis carolinensis
ENSACAG00000001006
N
0.000