VDAG_05874 (Verticillium dahliae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 VDAG_05874 T31410_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
VDAG_05874T0 RRM 52 122

Links

Other RRM family RBPs
Other Verticillium dahliae RBPs

68 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa010346m Prunus persica ppa010346m N 0.000
Glyma12g33400.1 Glycine max Glyma12g33400.1 N 0.000
GID1.0044779 Dictyostelium purpureum GID1.0044779 N 0.761
fgeneshMC_pm.5_#_40 Mucor circinelloides fgeneshMC_pm.5_#_40 N 0.817
estExt_Genewise1Plus.C_50921 Neurospora discreta estExt_Genewise1Plus.C_50921 N 0.930
estExt_Genewise1Plus.C_40730 Myceliophthora thermophila estExt_Genewise1Plus.C_40730 N 0.958
estExt_Genewise1Plus.C_150343 Trichoderma atroviride estExt_Genewise1Plus.C_150343 N 0.944
estExt_Genewise1.C_10147 Cochliobolus heterostrophus C5 estExt_Genewise1.C_10147 N 0.930
estExt_fgenesh1_kg.C_sca_10_chr8_2_00014 Nectria haematococca estExt_fgenesh1_kg.C_sca_10_chr8_2_00014 N 0.930
e_gw1.3.1174.1 Thielavia terrestris e_gw1.3.1174.1 N 0.958
e_gw1.17.191.1 Trichoderma reesei e_gw1.17.191.1 N 0.930
e_gw1.10.746.1 Trichoderma virens e_gw1.10.746.1 N 0.944
Cucsa.174450 Cucumis sativus Cucsa.174450 N 0.000
cassava43646.valid.m1 Manihot esculenta cassava43646.valid.m1 N 0.000
cassava43645.valid.m1 Manihot esculenta cassava43645.valid.m1 N 0.000
29983.m003140 Ricinus communis 29983.m003140 N 0.000
SB04G025800 Sorghum bicolor Sb04g025800 N 0.000
B9MYE5_POPTR Populus trichocarpa POPTR_0017s04640 N 0.000
Glyma13g37030.1 Glycine max Glyma13g37030.1 N 0.000
gw1.1.1171.1 Sporobolomyces roseus gw1.1.1171.1 N 0.718
PMAA_070830 Penicillium marneffei PMAA_070830 N 0.915
PDK_20s1327431g003 Phoenix dactylifera PDK_20s1327431g003 N 0.000
Pc13g04070 Penicillium chrysogenum Pc13g04070 N 0.930
Pa_7_2520 Podospora anserina Pa_7_2520 N 0.944
MDP0000315402 Malus x domestica MDP0000315402 N 0.000
gw1.12.351.1 Coccomyxa C 169 gw1.12.351.1 N 0.000
gw1.11.372.1 Chlorella vulgaris gw1.11.372.1 N 0.000
GSTUMT00010626001 Tuber melanosporum GSTUMT00010626001 N 0.873
fgenesh1_pm.00772_#_82 Aspergillus carbonarius fgenesh1_pm.00772_#_82 N 0.915
fgenesh1_pg.C_scaffold_1000747 Cryphonectria parasitica fgenesh1_pg.C_scaffold_1000747 N 0.930
chr3.CM0160.780.nd Lotus japonicus chr3.CM0160.780.nd N 0.000
EFA74823.1 Polysphondylium pallidum EFA74823.1 N 0.761
EAT82863.2 Phaeosphaeria nodorum EAT82863.2 N 0.930
GRMZM2G034804 Zea mays GRMZM2G034804 N 0.000
mgf009822m Mimulus guttatus mgf009822m N 0.000
mgf009384m Mimulus guttatus mgf009384m N 0.000
gw1.29.143.1 Phycomyces blakesleeanus gw1.29.143.1 N 0.817
A9PIB0_POPTR Populus trichocarpa POPTR_0007s01170 N 0.000
PHUM535920 Pediculus humanus PHUM535920 N 0.732
NCU00210 Neurospora crassa NCU00210 N 0.930
SPPG_00516 Spizellomyces punctatus SPPG_00516 N 0.817
SPOG_01217 Schizosaccharomyces cryophilus SPOG_01217 N 0.761
SNOG_09598 Stagonospora nodorum SNOG_09598 N 0.930
SJAG_01064 Schizosaccharomyces japonicus SJAG_01064 N 0.761
PTRG_00402 Pyrenophora tritici repentis PTRG_00402 N 0.930
PABG_07236 Paracoccidioides brasiliensis PABG_07236 N 0.930
MGYG_02166 Microsporum gypseum MGYG_02166 N 0.930
MGG_06296 Magnaporthe oryzae MGG_06296 N 0.958
MCYG_04468 Microsporum canis MCYG_04468 N 0.930
HCAG_07341 Histoplasma capsulatum HCAG_07341 N 0.930
GLRG_00177 Colletotrichum graminicola GLRG_00177 N 0.972
FVEG_07036 Fusarium verticillioides FVEG_07036 N 0.930
FGSG_05488 Fusarium graminearum FGSG_05488 N 0.972
CPSG_08054 Coccidioides posadasii CPSG_08054 N 0.930
CIMG_00837 Coccidioides immitis CIMG_00837 N 0.930
BDBG_08091 Blastomyces dermatitidis BDBG_08091 N 0.930
BC1G_04395 Botrytis cinerea BC1G_04395 N 0.930
SS1G_13629 Sclerotinia sclerotiorum SS1G_13629 N 0.930
TEQG_01953 Trichophyton equinum TEQG_01953 N 0.930
LOC_Os02g39890 Oryza sativa LOC_Os02g39890 N 0.000
GSVIVG00020599001 Vitis vinifera GSVIVG00020599001 N 0.000
XM_002863560.1 Arabidopsis lyrata fgenesh2_kg.8__389__AT5G44200.2 N 0.000
B5G279_TAEGU Taeniopygia guttata ENSTGUG00000007323 N 0.704
ncbp2 Dictyostelium discoideum DDB_G0287197 N 0.761
NFIA_084190 Neosartorya fischeri CADNFIAG00008064 N 0.901
An12g03930 Aspergillus niger CADANGAG00009835 N 0.915
AFUA_2G08570 Aspergillus fumigatus CADAFUAG00004718 N 0.901
BRADI3G48560 Brachypodium distachyon BRADI3G48560 N 0.000
CBP20 Arabidopsis thaliana AT5G44200-TAIR-G N 0.000
NCBP2_AEDAE Aedes aegypti AAEL006135 N 0.000
nasonia_NCBI_hmm1532803 Nasonia vitripennis nasonia_NCBI_hmm1532803 N 0.718
amel4_ncbi_hmm3188 Apis mellifera amel4_ncbi_hmm3188 N 0.718
PK11911.1 Cannabis sativa PK11911.1 N 0.000
VDBG_06810 Verticillium albo atrum VDBG_06810 N 1.000
TERG_03424 Trichophyton rubrum TERG_03424 N 0.930
AMAG_02834 Allomyces macrogynus AMAG_02834 N 0.732