CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSGGOG00000023049
(
Gorilla gorilla
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSGGOG00000023049
T37912_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
bru-3
M117_0.6
Drosophila melanogaster
KUGKUGU
RNAcompete
Ray et al.(2013)
RNCMPT00122
0.800
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGGOP00000019221
RRM
21
89
LFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGAS
ENSGGOP00000019221
RRM
305
375
IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK
Links
Other
RRM
family RBPs
Other
Gorilla gorilla
RBPs
58 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BRUNOL6
Homo sapiens
ENSG00000140488
D
0.793
bru-3
Drosophila melanogaster
FBgn0262350
D
0.800
Smp_131780
Schistosoma mansoni
Smp_131780
I
0.714
GG13757
Drosophila erecta
FBgn0106020
I
0.800
GF10965
Drosophila ananassae
FBgn0088005
I
0.800
CELF5
Takifugu rubripes
ENSTRUG00000017937
I
0.814
CELF6
Takifugu rubripes
ENSTRUG00000012391
I
0.821
CELF3
Takifugu rubripes
ENSTRUG00000012064
I
0.907
CELF5
Tetraodon nigroviridis
ENSTNIG00000010634
I
0.814
BRUNOL4
Taeniopygia guttata
ENSTGUG00000001649
I
0.814
CELF3
Tupaia belangeri
ENSTBEG00000010130
I
0.879
Brunol4
Rattus norvegicus
ENSRNOG00000014503
I
0.800
CELF6
Pan troglodytes
ENSPTRG00000034360
I
0.793
CELF6
Oryzias latipes
ENSORLG00000013392
I
0.829
GH14684
Drosophila grimshawi
FBgn0122160
I
0.793
GI13095
Drosophila mojavensis
FBgn0135852
I
0.793
GL21647
Drosophila persimilis
FBgn0159240
I
0.786
Smp_041280
Schistosoma mansoni
Smp_041280
I
0.786
Sjc_0024790
Schistosoma japonicum
Sjc_0024790
I
0.721
estExt_fgenesh2_pg.C_sca_1310025
Lottia gigantea
estExt_fgenesh2_pg.C_sca_1310025
I
0.700
62054
Helobdella robusta
62054
I
0.721
PHUM315130
Pediculus humanus
PHUM315130
I
0.807
GA28624-RA
Drosophila pseudoobscura
FBgn0249984
I
0.807
GE20053
Drosophila yakuba
FBgn0237378
I
0.800
GK17101
Drosophila willistoni
FBgn0219100
I
0.800
GJ13842
Drosophila virilis
FBgn0201061
I
0.793
GD12651
Drosophila simulans
FBgn0184378
I
0.800
GM24582
Drosophila sechellia
FBgn0179445
I
0.800
CELF6
Ochotona princeps
ENSOPRG00000019169
I
0.800
CELF5
Ochotona princeps
ENSOPRG00000007881
I
0.764
CELF2
Ornithorhynchus anatinus
ENSOANG00000015432
I
0.700
CELF5
Cavia porcellus
ENSCPOG00000005740
I
0.800
LOC100391960
Callithrix jacchus
ENSCJAG00000020663
I
0.700
LOC100414308
Callithrix jacchus
ENSCJAG00000018355
I
0.793
CELF5
Callithrix jacchus
ENSCJAG00000014799
I
0.800
Q2KI16_BOVIN
Bos taurus
ENSBTAG00000008937
I
0.700
CELF5
Anolis carolinensis
ENSACAG00000016959
I
0.793
CJA07020
Caenorhabditis japonica
CJA07020
I
0.714
AGAP004950
Anopheles gambiae
AGAP004950
I
0.814
AAEL014033
Aedes aegypti
AAEL014033
I
0.821
nasonia_NCBI_hmm496514
Nasonia vitripennis
nasonia_NCBI_hmm496514
I
0.786
amel4_ncbi_hmm7761
Apis mellifera
amel4_ncbi_hmm7761
I
0.793
CELF5
Gasterosteus aculeatus
ENSGACG00000012870
I
0.807
CELF6
Gasterosteus aculeatus
ENSGACG00000016626
I
0.829
A5A2G4_CHICK
Gallus gallus
ENSGALG00000001966
I
0.821
CELF6
Ornithorhynchus anatinus
ENSOANG00000011308
I
0.829
Celf6
Mus musculus
ENSMUSG00000032297
I
0.800
CELF5
Monodelphis domestica
ENSMODG00000019151
I
0.800
CELF6
Monodelphis domestica
ENSMODG00000001784
I
0.829
CELF3
Macaca mulatta
ENSMMUG00000016952
I
0.743
HEXA
Macaca mulatta
ENSMMUG00000010687
I
0.793
CELF4
Loxodonta africana
ENSLAFG00000021352
I
0.807
CELF2
Gorilla gorilla
ENSGGOG00000009330
I
0.700
CELF5
Gorilla gorilla
ENSGGOG00000002078
I
0.794
A5A2G2_CHICK
Gallus gallus
ENSGALG00000002413
I
0.814
LOAG_05508
Loa loa
LOAG_05508
I
0.779
CELF3
Ornithorhynchus anatinus
ENSOANG00000004406
N
0.723
ENSFCAG00000007908
Felis catus
ENSFCAG00000007908
N
0.864