CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GF10965
(
Drosophila ananassae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0088005
T43205_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
bru-3
M117_0.6
Drosophila melanogaster
KUGKUGU
RNAcompete
Ray et al.(2013)
RNCMPT00122
1.000
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0114157
RRM
57
125
LFVGMLSKQQTEDDVRQIFHPFGTIEECTILRGPDGASKGCAFVKFGSQQEAQSAITNLHGSQTMPGAS
FBpp0114157
RRM
339
409
LFIYHLPQEFGDAELMQMFLPFGNVISSKVFIDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK
Links
Other
RRM
family RBPs
Other
Drosophila ananassae
RBPs
64 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PTSG_00878
Salpingoeca rosetta
PTSG_00878
I
0.000
RO3G_10200
Rhizopus oryzae
RO3G_10200
I
0.000
RO3G_15452
Rhizopus oryzae
RO3G_15452
I
0.000
SPPG_04182
Spizellomyces punctatus
SPPG_04182
I
0.000
e_gw1.2.2306.1
Schizophyllum commune
e_gw1.2.2306.1
I
0.000
estExt_Genewise1Plus.C_20198
Mucor circinelloides
estExt_Genewise1Plus.C_20198
I
0.000
FER_chlre3.3.376.1.5
Chlamydomonas reinhardtii
FER_chlre3.3.376.1.5
I
0.000
estExt_Genemark1.C_60101
Coccomyxa C 169
estExt_Genemark1.C_60101
I
0.000
estExt_Genewise1.C_60440
Chlorella vulgaris
estExt_Genewise1.C_60440
I
0.000