Sjc_0030490 (Schistosoma japonicum)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Sjc_0030490 T54792_0.6 SDSPB (2008-Sep-5)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF1
M102_0.6 		Homo sapiens GRAGGA RNAcompete
Ray et al.(2013)
RNCMPT00106 		0.752
SRSF1
M351_0.6 		Homo sapiens AGGACAGAGC SELEX
Cook et al.(2011)
952_7543047 		0.752
SRSF1
M273_0.6 		Homo sapiens ACGCGCA SELEX
Cook et al.(2011)
243_7543047 		0.752
SRSF1
M272_0.6 		Homo sapiens RGAAGAAC SELEX
Cook et al.(2011)
242_7543047 		0.752
SRSF1
M270_0.6 		Homo sapiens Sequence logo not available GAAGAA CLIP-seq
Cook et al.(2011)
229_19116412 		0.752
SRSF1
M154_0.6 		Homo sapiens GGRGGAV RNAcompete
Ray et al.(2013)
RNCMPT00163 		0.752
SRSF1
M106_0.6 		Homo sapiens AGGASM RNAcompete
Ray et al.(2013)
RNCMPT00110 		0.752
SRSF1
M105_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00109 		0.752
SRSF1
M104_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00108 		0.752
SRSF1
M103_0.6 		Homo sapiens GGAGGA RNAcompete
Ray et al.(2013)
RNCMPT00107 		0.752
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
CPRT0000002874 RRM 8 76
CPRT0000002874 RRM 121 184

Links

Other RRM family RBPs
Other Schistosoma japonicum RBPs

77 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SRSF1 Homo sapiens ENSG00000136450 D 0.759
AAI28932 Xenopus laevis AAI28932 I 0.767
GL22249 Drosophila persimilis FBgn0159841 I 0.729
GH18077 Drosophila grimshawi FBgn0125545 I 0.722
GF16525 Drosophila ananassae FBgn0093546 I 0.722
GA20008-RA Drosophila pseudoobscura FBgn0080004 I 0.729
srsf1 Xenopus tropicalis ENSXETG00000008954 I 0.767
SRSF1 Vicugna pacos ENSVPAG00000010094 I 0.752
SRSF1 Tarsius syrichta ENSTSYG00000013899 I 0.759
SRSF1 Takifugu rubripes ENSTRUG00000017058 I 0.722
ENSTRUG00000003691 Takifugu rubripes ENSTRUG00000003691 I 0.737
ENSTNIG00000016223 Tetraodon nigroviridis ENSTNIG00000016223 I 0.737
SRSF1 Tupaia belangeri ENSTBEG00000015378 I 0.737
SRSF1 Spermophilus tridecemlineatus ENSSTOG00000000243 I 0.744
SRSF1 Sus scrofa ENSSSCG00000017626 I 0.759
SRSF1 Sorex araneus ENSSARG00000010949 I 0.744
D4A9L2_RAT Rattus norvegicus ENSRNOG00000042643 I 0.759
SRSF1 Pan troglodytes ENSPTRG00000009443 I 0.759
GK13511 Drosophila willistoni FBgn0215519 I 0.722
GE26323 Drosophila yakuba FBgn0243353 I 0.722
ISCW014398 Ixodes scapularis ISCW014398 I 0.767
AAI23123 Xenopus laevis AAI23123 I 0.767
AAH42354 Xenopus laevis AAH42354 I 0.767
Smp_185230 Schistosoma mansoni Smp_185230 I 0.992
Minc06188 Meloidogyne incognita Minc06188 I 0.722
Minc04015 Meloidogyne incognita Minc04015 I 0.722
Ame_R003447 Ailuropoda melanoleuca Ame_R003447 I 0.759
BGIBMGA013096 Bombyx mori BGIBMGA013096 I 0.729
gw.425.18.1 Branchiostoma floridae gw.425.18.1 I 0.744
gw1.25.268.1 Lottia gigantea gw1.25.268.1 I 0.752
fgenesh2_pg.scaffold_118000083 Branchiostoma floridae fgenesh2_pg.scaffold_118000083 I 0.789
fgenesh1_pg.scaffold_37000136 Nematostella vectensis fgenesh1_pg.scaffold_37000136 I 0.722
estExt_fgenesh2_pm.C_1180016 Branchiostoma floridae estExt_fgenesh2_pm.C_1180016 I 0.759
e_gw.425.15.1 Branchiostoma floridae e_gw.425.15.1 I 0.774
e_gw1.83.149.1 Daphnia pulex e_gw1.83.149.1 I 0.789
186029 Helobdella robusta 186029 I 0.722
rsp-3 Caenorhabditis elegans Y111B2A.18 I 0.722
Ppa-rsp-3 Pristionchus pacificus PPA25378 I 0.729
ENSPPYG00000008240 Pongo pygmaeus ENSPPYG00000008240 I 0.759
SRSF1 Procavia capensis ENSPCAG00000005199 I 0.759
SRSF1 Cavia porcellus ENSCPOG00000011760 I 0.759
LOC100392422 Callithrix jacchus ENSCJAG00000035311 I 0.744
ENSCING00000007375 Ciona intestinalis ENSCING00000007375 I 0.714
SRSF1 Choloepus hoffmanni ENSCHOG00000001899 I 0.759
SRSF1 Canis familiaris ENSCAFG00000017430 I 0.759
SFRS1_BOVIN Bos taurus ENSBTAG00000014766 I 0.759
SRSF1 Anolis carolinensis ENSACAG00000005542 I 0.774
CRE13382 Caenorhabditis remanei CRE13382 I 0.729
CPIJ008786 Culex quinquefasciatus CPIJ008786 I 0.729
CJA01159 Caenorhabditis japonica CJA01159 I 0.707
CBN06053 Caenorhabditis brenneri CBN06053 I 0.729
CBG03563 Caenorhabditis briggsae CBG03563 I 0.729
AGAP010496 Anopheles gambiae AGAP010496 I 0.722
AAEL006473 Aedes aegypti AAEL006473 I 0.737
nasonia_NCBI_hmm519234 Nasonia vitripennis nasonia_NCBI_hmm519234 I 0.737
DGIL_AUG5s14011g9t1 Acyrtosiphon pisum DGIL_AUG5s14011g9t1 I 0.729
amel4_ncbi_hmm5595 Apis mellifera amel4_ncbi_hmm5595 I 0.744
ENSCSAVG00000006093 Ciona savignyi ENSCSAVG00000006093 I 0.722
SRSF9 Danio rerio ENSDARG00000008097 I 0.701
ENSORLG00000004580 Oryzias latipes ENSORLG00000004580 I 0.726
ENSOCUG00000017678 Oryctolagus cuniculus ENSOCUG00000017678 I 0.744
ENSMUSG00000090049 Mus musculus ENSMUSG00000090049 I 0.744
Srsf1 Mus musculus ENSMUSG00000018379 I 0.759
SRSF1 Monodelphis domestica ENSMODG00000014781 I 0.744
SRSF1 Macaca mulatta ENSMMUG00000004725 I 0.759
ENSMMUG00000003260 Macaca mulatta ENSMMUG00000003260 I 0.722
SRSF1 Myotis lucifugus ENSMLUG00000011040 I 0.744
SRSF1 Microcebus murinus ENSMICG00000013639 I 0.744
SRSF1 Loxodonta africana ENSLAFG00000025743 I 0.759
SRSF1 Gorilla gorilla ENSGGOG00000004386 I 0.759
ENSGACG00000020621 Gasterosteus aculeatus ENSGACG00000020621 I 0.729
ENSGACG00000011094 Gasterosteus aculeatus ENSGACG00000011094 I 0.737
SRSF1 Echinops telfairi ENSETEG00000005349 I 0.729
SRSF1 Erinaceus europaeus ENSEEUG00000009255 I 0.744
LOC100056763 Equus caballus ENSECAG00000016654 I 0.759
srsf1a Danio rerio ENSDARG00000057691 I 0.759
CpipJ_CPIJ008786 Culex pipiens CpipJ_CPIJ008786 I 0.729