GA20008-RA (Drosophila pseudoobscura)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0080004 T43172_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SF2
M064_0.6 		Drosophila melanogaster DGGAGGA RNAcompete
Ray et al.(2013)
RNCMPT00066 		0.890
SRSF1
M106_0.6 		Homo sapiens AGGASM RNAcompete
Ray et al.(2013)
RNCMPT00110 		0.774
SRSF1
M105_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00109 		0.774
SRSF1
M104_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00108 		0.774
SRSF1
M103_0.6 		Homo sapiens GGAGGA RNAcompete
Ray et al.(2013)
RNCMPT00107 		0.774
SRSF1
M102_0.6 		Homo sapiens GRAGGA RNAcompete
Ray et al.(2013)
RNCMPT00106 		0.774
SRSF1
M351_0.6 		Homo sapiens AGGACAGAGC SELEX
Cook et al.(2011)
952_7543047 		0.774
SRSF1
M273_0.6 		Homo sapiens ACGCGCA SELEX
Cook et al.(2011)
243_7543047 		0.774
SRSF1
M272_0.6 		Homo sapiens RGAAGAAC SELEX
Cook et al.(2011)
242_7543047 		0.774
SRSF1
M270_0.6 		Homo sapiens Sequence logo not available GAAGAA CLIP-seq
Cook et al.(2011)
229_19116412 		0.774
SRSF1
M154_0.6 		Homo sapiens GGRGGAV RNAcompete
Ray et al.(2013)
RNCMPT00163 		0.774
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0284512 RRM 9 75
FBpp0284512 RRM 117 180

Links

Other RRM family RBPs
Other Drosophila pseudoobscura RBPs

79 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GL22249 Drosophila persimilis FBgn0159841 I 1.000
GK13511 Drosophila willistoni FBgn0215519 I 0.992
GF16525 Drosophila ananassae FBgn0093546 I 0.992
GE26323 Drosophila yakuba FBgn0243353 I 0.992
GH18077 Drosophila grimshawi FBgn0125545 I 0.992
AAEL006473 Aedes aegypti AAEL006473 I 0.977
AGAP010496 Anopheles gambiae AGAP010496 I 0.962
CpipJ_CPIJ008786 Culex pipiens CpipJ_CPIJ008786 I 0.954
CPIJ008786 Culex quinquefasciatus CPIJ008786 I 0.954
BGIBMGA013096 Bombyx mori BGIBMGA013096 I 0.947
nasonia_NCBI_hmm519234 Nasonia vitripennis nasonia_NCBI_hmm519234 I 0.924
amel4_ncbi_hmm5595 Apis mellifera amel4_ncbi_hmm5595 I 0.908
SF2 Drosophila melanogaster FBgn0040284 D 0.890
GJ23504 Drosophila virilis FBgn0210602 I 0.890
GI24651 Drosophila mojavensis FBgn0147373 I 0.890
GG20059 Drosophila erecta FBgn0112258 I 0.890
GM15444 Drosophila sechellia FBgn0170362 I 0.890
e_gw1.83.149.1 Daphnia pulex e_gw1.83.149.1 I 0.885
DGIL_AUG5s14011g9t1 Acyrtosiphon pisum DGIL_AUG5s14011g9t1 I 0.885
ISCW014398 Ixodes scapularis ISCW014398 I 0.878
SRSF1 Cavia porcellus ENSCPOG00000011760 I 0.780
SRSF1 Tarsius syrichta ENSTSYG00000013899 I 0.780
SRSF1 Choloepus hoffmanni ENSCHOG00000001899 I 0.780
Srsf1 Mus musculus ENSMUSG00000018379 I 0.780
ENSPPYG00000008240 Pongo pygmaeus ENSPPYG00000008240 I 0.780
SRSF1 Pan troglodytes ENSPTRG00000009443 I 0.780
D4A9L2_RAT Rattus norvegicus ENSRNOG00000042643 I 0.780
SRSF1 Sus scrofa ENSSSCG00000017626 I 0.780
SRSF1 Procavia capensis ENSPCAG00000005199 I 0.780
SRSF1 Canis familiaris ENSCAFG00000017430 I 0.780
SRSF1 Homo sapiens ENSG00000136450 D 0.780
SRSF1 Gorilla gorilla ENSGGOG00000004386 I 0.780
SRSF1 Loxodonta africana ENSLAFG00000025743 I 0.780
SRSF1 Macaca mulatta ENSMMUG00000004725 I 0.780
LOC100056763 Equus caballus ENSECAG00000016654 I 0.780
SFRS1_BOVIN Bos taurus ENSBTAG00000014766 I 0.780
Ame_R003447 Ailuropoda melanoleuca Ame_R003447 I 0.780
gw1.25.268.1 Lottia gigantea gw1.25.268.1 I 0.780
AAI23123 Xenopus laevis AAI23123 I 0.773
srsf1a Danio rerio ENSDARG00000057691 I 0.773
SRSF1 Vicugna pacos ENSVPAG00000010094 I 0.773
AAH42354 Xenopus laevis AAH42354 I 0.773
SRSF1 Anolis carolinensis ENSACAG00000005542 I 0.773
AAI28932 Xenopus laevis AAI28932 I 0.773
srsf1 Xenopus tropicalis ENSXETG00000008954 I 0.773
ENSMUSG00000090049 Mus musculus ENSMUSG00000090049 I 0.765
SRSF1 Monodelphis domestica ENSMODG00000014781 I 0.765
SRSF1 Myotis lucifugus ENSMLUG00000011040 I 0.765
ENSOCUG00000017678 Oryctolagus cuniculus ENSOCUG00000017678 I 0.765
SRSF1 Sorex araneus ENSSARG00000010949 I 0.765
SRSF1 Takifugu rubripes ENSTRUG00000017058 I 0.765
SRSF1 Spermophilus tridecemlineatus ENSSTOG00000000243 I 0.765
ENSTNIG00000016223 Tetraodon nigroviridis ENSTNIG00000016223 I 0.765
ENSTRUG00000003691 Takifugu rubripes ENSTRUG00000003691 I 0.765
SRSF1 Microcebus murinus ENSMICG00000013639 I 0.765
LOC100392422 Callithrix jacchus ENSCJAG00000035311 I 0.765
SRSF1 Erinaceus europaeus ENSEEUG00000009255 I 0.765
ENSORLG00000004580 Oryzias latipes ENSORLG00000004580 I 0.754
SRSF1 Echinops telfairi ENSETEG00000005349 I 0.750
estExt_fgenesh2_pm.C_1180016 Branchiostoma floridae estExt_fgenesh2_pm.C_1180016 I 0.750
fgenesh2_pg.scaffold_118000083 Branchiostoma floridae fgenesh2_pg.scaffold_118000083 I 0.750
ENSGACG00000020621 Gasterosteus aculeatus ENSGACG00000020621 I 0.742
Ppa-rsp-3 Pristionchus pacificus PPA25378 I 0.742
SRSF1 Tupaia belangeri ENSTBEG00000015378 I 0.742
ENSMMUG00000003260 Macaca mulatta ENSMMUG00000003260 I 0.742
ENSGACG00000011094 Gasterosteus aculeatus ENSGACG00000011094 I 0.742
e_gw.425.15.1 Branchiostoma floridae e_gw.425.15.1 I 0.735
gw.425.18.1 Branchiostoma floridae gw.425.18.1 I 0.735
SRSF1 Tetraodon nigroviridis ENSTNIG00000009993 I 0.729
Sjc_0030490 Schistosoma japonicum Sjc_0030490 I 0.729
Minc04015 Meloidogyne incognita Minc04015 I 0.729
Minc06188 Meloidogyne incognita Minc06188 I 0.729
Smp_185230 Schistosoma mansoni Smp_185230 I 0.729
LOAG_10275 Loa loa LOAG_10275 I 0.725
ENSCING00000007375 Ciona intestinalis ENSCING00000007375 I 0.718
fgenesh1_pg.scaffold_37000136 Nematostella vectensis fgenesh1_pg.scaffold_37000136 I 0.714
LOC100400391 Callithrix jacchus ENSCJAG00000008111 I 0.712
LOC100392422 Callithrix jacchus ENSCJAG00000014041 I 0.712
ENSCSAVG00000006093 Ciona savignyi ENSCSAVG00000006093 I 0.702