PK20504.1 (Cannabis sativa)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		PK20504.1 T00354_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PK20504.1 CCCH ZF 203 226
PK20504.1 RRM 367 427

Links

Other CCCH ZF,RRM family RBPs
Other Cannabis sativa RBPs

58 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
27613.m000645 Ricinus communis 27613.m000645 N 0.802
29223.m000023 Ricinus communis 29223.m000023 N 0.776
30169.m006471 Ricinus communis 30169.m006471 N 0.729
AT2G05160 Arabidopsis thaliana AT2G05160-TAIR-G N 0.759
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.706
B9GTF9_POPTR Populus trichocarpa POPTR_0002s22240 N 0.770
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.729
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.706
B9IAR9_POPTR Populus trichocarpa POPTR_0014s16340 N 0.839
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.706
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.706
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.713
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.729
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.729
cassava31399.valid.m1 Manihot esculenta cassava31399.valid.m1 N 0.828
cassava31400.valid.m1 Manihot esculenta cassava31400.valid.m1 N 0.828
cassava36931.valid.m1 Manihot esculenta cassava36931.valid.m1 N 0.828
cassava7063.valid.m1 Manihot esculenta cassava7063.valid.m1 N 0.859
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.718
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.718
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.718
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.718
chr2.CM0018.150.nc Lotus japonicus chr2.CM0018.150.nc N 0.709
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.729
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.721
e_gw1.136.54.1 Physcomitrella patens e_gw1.136.54.1 N 0.718
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 0.701
Glyma08g43790.1 Glycine max Glyma08g43790.1 N 0.713
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.718
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.718
Glyma11g01780.1 Glycine max Glyma11g01780.1 N 0.701
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.718
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.718
Glyma14g01930.1 Glycine max Glyma14g01930.1 N 0.724
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.729
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.706
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.729
GSVIVG00037782001 Vitis vinifera GSVIVG00037782001 N 0.736
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.706
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.706
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.706
MDP0000120231 Malus x domestica MDP0000120231 N 0.729
MDP0000120462 Malus x domestica MDP0000120462 N 0.718
MDP0000214614 Malus x domestica MDP0000214614 N 0.871
MDP0000243086 Malus x domestica MDP0000243086 N 0.718
MDP0000906147 Malus x domestica MDP0000906147 N 0.851
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.701
mgf000973m Mimulus guttatus mgf000973m N 0.729
mgf003557m Mimulus guttatus mgf003557m N 0.724
PK01281.1 Cannabis sativa PK01281.1 N 0.776
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.718
ppa002383m Prunus persica ppa002383m N 0.733
ppa002413m Prunus persica ppa002413m N 0.718
ppa003564m Prunus persica ppa003564m N 0.871
ppa019338m Prunus persica ppa019338m N 0.793
ppa023263m Prunus persica ppa023263m N 0.718
SB08G001980 Sorghum bicolor Sb08g001980 N 0.729
XM_002876131.1 Arabidopsis lyrata fgenesh2_kg.5__1664__AT3G52980.1 N 0.759