MKRN1 (Loxodonta africana)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSLAFG00000018408 T02802_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000015425 CCCH ZF 56 81
ENSLAFP00000015425 CCCH ZF 85 110
ENSLAFP00000015425 CCCH ZF 210 234
ENSLAFP00000015425 CCCH ZF 367 392
ENSLAFP00000027963 CCCH ZF 43 68
ENSLAFP00000027963 CCCH ZF 72 97
ENSLAFP00000027963 CCCH ZF 197 221
ENSLAFP00000027963 CCCH ZF 354 379

Links

Other CCCH ZF family RBPs
Other Loxodonta africana RBPs

39 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH74368 Xenopus laevis AAH74368 N 0.779
Ame_R001963 Ailuropoda melanoleuca Ame_R001963 N 0.923
ENSCAFG00000003953 Canis familiaris ENSCAFG00000003953 N 0.913
ENSCPOG00000000948 Cavia porcellus ENSCPOG00000000948 N 0.923
ENSGGOG00000023977 Gorilla gorilla ENSGGOG00000023977 N 0.971
ENSMMUG00000001017 Macaca mulatta ENSMMUG00000001017 N 0.837
ENSMODG00000013686 Monodelphis domestica ENSMODG00000013686 N 0.875
ENSOCUG00000010180 Oryctolagus cuniculus ENSOCUG00000010180 N 0.913
ENSOGAG00000009877 Otolemur garnettii ENSOGAG00000009877 N 0.846
ENSPPYG00000018057 Pongo pygmaeus ENSPPYG00000018057 N 0.904
ENSPPYG00000020255 Pongo pygmaeus ENSPPYG00000020255 N 0.875
LOC100065893 Equus caballus ENSECAG00000017929 N 0.923
MKRN1 Taeniopygia guttata ENSTGUG00000011669 N 0.779
MKRN1 Tursiops truncatus ENSTTRG00000009528 N 0.981
MKRN1 Ochotona princeps ENSOPRG00000010353 N 0.913
MKRN1 Oryzias latipes ENSORLG00000012765 N 0.817
MKRN1 Tarsius syrichta ENSTSYG00000009996 N 0.856
MKRN1 Procavia capensis ENSPCAG00000014683 N 0.837
MKRN1 Sorex araneus ENSSARG00000013683 N 0.846
MKRN1 Tetraodon nigroviridis ENSTNIG00000007231 N 0.736
MKRN1 Sus scrofa ENSSSCG00000016498 N 0.981
MKRN1 Anolis carolinensis ENSACAG00000010934 N 0.875
Mkrn1 Mus musculus ENSMUSG00000029922 N 0.971
MKRN1 Felis catus ENSFCAG00000013043 N 0.913
MKRN1 Homo sapiens ENSG00000133606 N 0.971
MKRN1 Gasterosteus aculeatus ENSGACG00000019227 N 0.745
MKRN1 Callithrix jacchus ENSCJAG00000004068 N 0.846
MKRN1 Choloepus hoffmanni ENSCHOG00000011015 N 0.981
MKRN1 Meleagris gallopavo ENSMGAG00000013208 N 0.798
MKRN1 Microcebus murinus ENSMICG00000002114 N 0.942
MKRN1 Macaca mulatta ENSMMUG00000010420 N 0.913
mkrn1 Danio rerio ENSDARG00000041665 N 0.764
MKRN1_MACEU Macropus eugenii ENSMEUG00000007399 N 0.875
NP_001072050.1 Takifugu rubripes ENSTRUG00000012057 N 0.745
Q68FR1_RAT Rattus norvegicus ENSRNOG00000009280 N 0.981
Q6GLT5 Xenopus laevis Q6GLT5 N 0.779
Q9PTI4_CHICK Gallus gallus ENSGALG00000012852 N 0.865
XR_024878.1 Pan troglodytes ENSPTRG00000019766 N 0.962