CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Q68FR1_RAT
(
Rattus norvegicus
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSRNOG00000009280
T03313_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000013124
CCCH ZF
56
81
TKQVTCRYFMHGVCKEGDNCRYSHDL
ENSRNOP00000013124
CCCH ZF
85
110
PYGVVCKYFQRGYCVYGDRCRYEHSK
ENSRNOP00000013124
CCCH ZF
210
234
EKQLCPYAAVGECRYGENCVYLHGD
ENSRNOP00000013124
CCCH ZF
367
392
NKACRYFDEGRGSCPFGGNCFYKHAY
Links
Other
CCCH ZF
family RBPs
Other
Rattus norvegicus
RBPs
38 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CJA05016
Caenorhabditis japonica
CJA05016
N
0.000
CJA17358
Caenorhabditis japonica
CJA17358
N
0.000
CJA19095
Caenorhabditis japonica
CJA19095
N
0.000
CJA19667
Caenorhabditis japonica
CJA19667
N
0.000
CJA20544
Caenorhabditis japonica
CJA20544
N
0.000
LOC_Os09g09400
Oryza sativa
LOC_Os09g09400
N
0.000
LOC_Os11g24270
Oryza sativa
LOC_Os11g24270
N
0.000
PGTG_06776
Puccinia graminis
PGTG_06776
N
0.000
PGTG_13838
Puccinia graminis
PGTG_13838
N
0.000
PGTG_16926
Puccinia graminis
PGTG_16926
N
0.000
PGTG_18222
Puccinia graminis
PGTG_18222
N
0.000