LOC_Os04g45430 (Oryza sativa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LOC_Os04g45430 T11316_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os04g45430.1 CCHC ZF 672 689

Links

Other CCHC ZF family RBPs
Other Oryza sativa RBPs

75 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29923.m000811 Ricinus communis 29923.m000811 I 0.000
A9P7Z9_POPTR Populus trichocarpa POPTR_0010s22380 I 0.000
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.000
AT3G54770 Arabidopsis thaliana AT3G54770-TAIR-G N 0.000
B9HLZ0_POPTR Populus trichocarpa POPTR_0008s04430 I 0.000
BGIOSIBCE008410 Oryza indica BGIOSIBCE008410 I 0.000
BRADI1G45540 Brachypodium distachyon BRADI1G45540 I 0.000
cassava2993.m1 Manihot esculenta cassava2993.m1 I 0.000
cassava42438.valid.m1 Manihot esculenta cassava42438.valid.m1 I 0.000
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.000
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.000
chr1.CM0105.870.nc Lotus japonicus chr1.CM0105.870.nc N 0.000
Cucsa.165980 Cucumis sativus Cucsa.165980 I 0.000
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.000
Glyma07g05250.1 Glycine max Glyma07g05250.1 N 0.000
Glyma16g01780.1 Glycine max Glyma16g01780.1 N 0.000
GRMZM2G073700 Zea mays GRMZM2G073700 I 0.000
GRMZM2G141386 Zea mays GRMZM2G141386 I 0.000
GRMZM2G145562 Zea mays GRMZM2G145562 N 0.000
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.000
GSVIVG00016345001 Vitis vinifera GSVIVG00016345001 N 0.000
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.000
LOC_Os02g48340 Oryza sativa LOC_Os02g48340 I 0.000
LOC_Os03g17760 Oryza sativa LOC_Os03g17760 I 0.000
LOC_Os06g11730 Oryza sativa LOC_Os06g11730 I 0.000
MDP0000125082 Malus x domestica MDP0000125082 I 0.000
mgf016660m Mimulus guttatus mgf016660m I 0.000
PK29603.1 Cannabis sativa PK29603.1 I 0.000
ppa009716m Prunus persica ppa009716m I 0.000
ppa026384m Prunus persica ppa026384m I 0.000
SB01G038700 Sorghum bicolor Sb01g038700 I 0.000
XM_002877953.1 Arabidopsis lyrata fgenesh2_kg.5__1875__AT3G54770.1 N 0.000
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.000
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.000