LOC_Os06g11730 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os06g11730 T45058_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.812
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os06g11730.1 RRM 41 109

Links

Other RRM family RBPs
Other Oryza sativa RBPs

60 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GRMZM2G073700 Zea mays GRMZM2G073700 I 0.913
BRADI1G45540 Brachypodium distachyon BRADI1G45540 I 0.913
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.812
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.812
GRMZM2G303915 Zea mays GRMZM2G303915 I 0.812
BGIOSIBCE008701 Oryza indica BGIOSIBCE008701 I 0.797
LOC_Os02g51890 Oryza sativa LOC_Os02g51890 I 0.797
BRADI3G58710 Brachypodium distachyon BRADI3G58710 I 0.797
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.783
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.754
ppa009716m Prunus persica ppa009716m I 0.754
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.754
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.754
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.754
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.754
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.739
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.739
ppa026384m Prunus persica ppa026384m I 0.739
ppa009964m Prunus persica ppa009964m I 0.739
MDP0000138486 Malus x domestica MDP0000138486 I 0.739
29923.m000811 Ricinus communis 29923.m000811 I 0.739
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.739
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.739
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.739
mgf017214m Mimulus guttatus mgf017214m I 0.739
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.725
GRMZM2G042195 Zea mays GRMZM2G042195 I 0.725
PK21213.1 Cannabis sativa PK21213.1 I 0.725
ppa019392m Prunus persica ppa019392m I 0.725
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.725
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.725
B9HLZ0_POPTR Populus trichocarpa POPTR_0008s04430 I 0.725
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.725
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.725
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.725
ppa018926m Prunus persica ppa018926m I 0.725
CU179634_3 Medicago truncatula CU179634_3 I 0.725
MDP0000184420 Malus x domestica MDP0000184420 I 0.725
MDP0000125082 Malus x domestica MDP0000125082 I 0.725
XM_002893090.1 Arabidopsis lyrata fgenesh2_kg.1__2278__AT1G20880.1 I 0.710
XM_002890463.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001899 N 0.710
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.710
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.710
SB04G030020 Sorghum bicolor Sb04g030020 I 0.710
MDP0000744398 Malus x domestica MDP0000744398 I 0.710
GRMZM2G123796 Zea mays GRMZM2G123796 I 0.710
LOC_Os02g48340 Oryza sativa LOC_Os02g48340 I 0.710
mgf016660m Mimulus guttatus mgf016660m I 0.710
chr1.CM0105.870.nc Lotus japonicus chr1.CM0105.870.nc N 0.710
cassava2993.m1 Manihot esculenta cassava2993.m1 I 0.710
PK29603.1 Cannabis sativa PK29603.1 I 0.710
MDP0000284454 Malus x domestica MDP0000284454 I 0.710
MDP0000308970 Malus x domestica MDP0000308970 I 0.710
MDP0000488395 Malus x domestica MDP0000488395 I 0.710
ppa016222m Prunus persica ppa016222m I 0.710
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.710
BGIOSIBCE008410 Oryza indica BGIOSIBCE008410 I 0.710
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.710
MDP0000134468 Malus x domestica MDP0000134468 I 0.710
MDP0000548950 Malus x domestica MDP0000548950 I 0.710