ppa009716m (Prunus persica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ppa009716m T58414_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.868
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ppa009716m RRM 32 99

Links

Other RRM family RBPs
Other Prunus persica RBPs

125 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.926
MDP0000184420 Malus x domestica MDP0000184420 I 0.926
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.912
MDP0000284454 Malus x domestica MDP0000284454 I 0.912
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.912
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.912
mgf017214m Mimulus guttatus mgf017214m I 0.897
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.897
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.882
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.868
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.868
PK21213.1 Cannabis sativa PK21213.1 I 0.868
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.868
CU179634_3 Medicago truncatula CU179634_3 I 0.853
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.838
30076.m004440 Ricinus communis 30076.m004440 I 0.838
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.838
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.824
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.824
ppa009964m Prunus persica ppa009964m I 0.824
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.824
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.824
MDP0000548950 Malus x domestica MDP0000548950 I 0.824
MDP0000488395 Malus x domestica MDP0000488395 I 0.824
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.824
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.824
MDP0000744398 Malus x domestica MDP0000744398 I 0.824
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.824
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.812
MDP0000138486 Malus x domestica MDP0000138486 I 0.809
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.809
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.809
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.809
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.809
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.809
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.809
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.809
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.809
PK14266.1 Cannabis sativa PK14266.1 I 0.809
ppa016222m Prunus persica ppa016222m I 0.809
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.797
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.797
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.797
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.797
MDP0000134468 Malus x domestica MDP0000134468 I 0.794
ppa018926m Prunus persica ppa018926m I 0.783
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.783
ppa018603m Prunus persica ppa018603m I 0.783
ppa019392m Prunus persica ppa019392m I 0.783
PK15672.1 Cannabis sativa PK15672.1 I 0.783
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.783
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.783
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.779
29908.m006046 Ricinus communis 29908.m006046 I 0.779
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.779
MDP0000118777 Malus x domestica MDP0000118777 I 0.768
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.768
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.768
MDP0000857317 Malus x domestica MDP0000857317 I 0.768
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.765
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.765
MDP0000233609 Malus x domestica MDP0000233609 I 0.765
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.765
LOC_Os03g14190 Oryza sativa LOC_Os03g14190 I 0.765
XM_002890463.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001899 N 0.754
LOC_Os06g11730 Oryza sativa LOC_Os06g11730 I 0.754
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.754
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.754
29923.m000811 Ricinus communis 29923.m000811 I 0.750
30170.m013735 Ricinus communis 30170.m013735 I 0.750
29983.m003293 Ricinus communis 29983.m003293 I 0.750
GRMZM2G123796 Zea mays GRMZM2G123796 I 0.750
PDK_20s1420851g001 Phoenix dactylifera PDK_20s1420851g001 I 0.750
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.750
LOC_Os03g17760 Oryza sativa LOC_Os03g17760 I 0.750
Cucsa.237790 Cucumis sativus Cucsa.237790 N 0.750
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.739
BRADI1G45540 Brachypodium distachyon BRADI1G45540 I 0.739
ppa009564m Prunus persica ppa009564m I 0.735
A9P7Z9_POPTR Populus trichocarpa POPTR_0010s22380 I 0.735
BGIOSIBCE008410 Oryza indica BGIOSIBCE008410 I 0.735
BGIOSIBCE004465 Oryza indica BGIOSIBCE004465 I 0.735
LOC_Os01g65550 Oryza sativa LOC_Os01g65550 I 0.735
GRMZM2G042195 Zea mays GRMZM2G042195 I 0.735
GRMZM2G019266 Zea mays GRMZM2G019266 I 0.735
LjT28A08.70.nc Lotus japonicus LjT28A08.70.nc I 0.735
LOC_Os02g48340 Oryza sativa LOC_Os02g48340 I 0.735
Glyma12g00500.1 Glycine max Glyma12g00500.1 I 0.735
SB04G030020 Sorghum bicolor Sb04g030020 I 0.735
SB03G041530 Sorghum bicolor Sb03g041530 I 0.735
cassava6633.valid.m1 Manihot esculenta cassava6633.valid.m1 I 0.735
SB03G046430 Sorghum bicolor Sb03g046430 N 0.735
cassava6634.valid.m1 Manihot esculenta cassava6634.valid.m1 I 0.735
B9I875_POPTR Populus trichocarpa POPTR_0013s09120 I 0.735
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.735
Glyma09g36880.1 Glycine max Glyma09g36880.1 I 0.735
Medtr4g041420 Medicago truncatula Medtr4g041420 I 0.735
GSVIVG00037134001 Vitis vinifera GSVIVG00037134001 I 0.735
SB01G038700 Sorghum bicolor Sb01g038700 I 0.735
PK29603.1 Cannabis sativa PK29603.1 I 0.725
GRMZM2G073700 Zea mays GRMZM2G073700 I 0.725
MDP0000271231 Malus x domestica MDP0000271231 N 0.721
MDP0000181802 Malus x domestica MDP0000181802 N 0.721
MDP0000125082 Malus x domestica MDP0000125082 I 0.721
Glyma06g14020.1 Glycine max Glyma06g14020.1 N 0.721
cassava42438.valid.m1 Manihot esculenta cassava42438.valid.m1 I 0.721
BRADI2G56676 Brachypodium distachyon BRADI2G56676 I 0.721
XM_002329131.1 Populus trichocarpa POPTR_0019s09640 N 0.721
cassava12008.valid.m1 Manihot esculenta cassava12008.valid.m1 N 0.721
XM_002893090.1 Arabidopsis lyrata fgenesh2_kg.1__2278__AT1G20880.1 I 0.721
mgf002440m Mimulus guttatus mgf002440m N 0.721
AT1G22910 Arabidopsis thaliana AT1G22910-TAIR-G I 0.721
cassava2993.m1 Manihot esculenta cassava2993.m1 I 0.721
GRMZM2G141386 Zea mays GRMZM2G141386 I 0.721
GRMZM2G005236 Zea mays GRMZM2G005236 I 0.721
chr1.CM0105.870.nc Lotus japonicus chr1.CM0105.870.nc N 0.710
LOC_Os01g72834 Oryza sativa LOC_Os01g72834 N 0.706
B9HLZ0_POPTR Populus trichocarpa POPTR_0008s04430 I 0.706
cassava39894.m1 Manihot esculenta cassava39894.m1 N 0.706
ppa026384m Prunus persica ppa026384m I 0.706
mgf016660m Mimulus guttatus mgf016660m I 0.706
BGIOSIBCE005068 Oryza indica BGIOSIBCE005068 N 0.706
BRADI3G53240 Brachypodium distachyon BRADI3G53240 I 0.706
Cucsa.165980 Cucumis sativus Cucsa.165980 I 0.706
MDP0000308970 Malus x domestica MDP0000308970 I 0.706