cassava44391.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava44391.m1 T49422_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.794
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
cassava44391.m1 RRM 18 85

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

104 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.971
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.942
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.941
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.941
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.941
MDP0000134468 Malus x domestica MDP0000134468 I 0.941
29908.m006046 Ricinus communis 29908.m006046 I 0.926
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.926
PK15672.1 Cannabis sativa PK15672.1 I 0.913
MDP0000233609 Malus x domestica MDP0000233609 I 0.912
ppa019392m Prunus persica ppa019392m I 0.899
ppa018926m Prunus persica ppa018926m I 0.899
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.884
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.882
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.870
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.870
mgf017214m Mimulus guttatus mgf017214m I 0.868
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.855
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.855
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.855
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.853
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.853
PK21213.1 Cannabis sativa PK21213.1 I 0.853
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.853
XM_002890463.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001899 N 0.841
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.838
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.838
MDP0000138486 Malus x domestica MDP0000138486 I 0.824
MDP0000488395 Malus x domestica MDP0000488395 I 0.824
MDP0000548950 Malus x domestica MDP0000548950 I 0.824
ppa009964m Prunus persica ppa009964m I 0.824
MDP0000744398 Malus x domestica MDP0000744398 I 0.824
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.824
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.824
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.824
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.824
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.824
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.824
PK14266.1 Cannabis sativa PK14266.1 I 0.809
30076.m004440 Ricinus communis 30076.m004440 I 0.809
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.809
ppa016222m Prunus persica ppa016222m I 0.809
ppa009716m Prunus persica ppa009716m I 0.809
CU179634_3 Medicago truncatula CU179634_3 I 0.809
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.794
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.794
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.794
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.794
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.794
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.783
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.779
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.779
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.779
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.779
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.779
MDP0000118777 Malus x domestica MDP0000118777 I 0.768
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.768
MDP0000857317 Malus x domestica MDP0000857317 I 0.768
MDP0000284454 Malus x domestica MDP0000284454 I 0.765
LOC_Os02g48340 Oryza sativa LOC_Os02g48340 I 0.765
BGIOSIBCE008410 Oryza indica BGIOSIBCE008410 I 0.765
Cucsa.160090 Cucumis sativus Cucsa.160090 I 0.754
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.754
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.754
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.754
MDP0000184420 Malus x domestica MDP0000184420 I 0.750
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.750
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.739
LOC_Os06g11730 Oryza sativa LOC_Os06g11730 I 0.739
BRADI1G45540 Brachypodium distachyon BRADI1G45540 I 0.739
ppa018603m Prunus persica ppa018603m I 0.739
Cucsa.165980 Cucumis sativus Cucsa.165980 I 0.735
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.735
GRMZM2G073700 Zea mays GRMZM2G073700 I 0.725
Glyma06g14020.1 Glycine max Glyma06g14020.1 N 0.721
cassava6634.valid.m1 Manihot esculenta cassava6634.valid.m1 I 0.721
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.721
SB03G041530 Sorghum bicolor Sb03g041530 I 0.721
BRADI3G58710 Brachypodium distachyon BRADI3G58710 I 0.721
cassava6633.valid.m1 Manihot esculenta cassava6633.valid.m1 I 0.721
LOC_Os03g14190 Oryza sativa LOC_Os03g14190 I 0.721
BGIOSIBCE004465 Oryza indica BGIOSIBCE004465 I 0.721
29923.m000811 Ricinus communis 29923.m000811 I 0.721
BRADI3G53240 Brachypodium distachyon BRADI3G53240 I 0.721
cassava2993.m1 Manihot esculenta cassava2993.m1 I 0.721
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.721
LOC_Os01g65550 Oryza sativa LOC_Os01g65550 I 0.721
GRMZM2G042195 Zea mays GRMZM2G042195 I 0.721
GRMZM2G019266 Zea mays GRMZM2G019266 I 0.721
Medtr3g122940 Medicago truncatula Medtr3g122940 N 0.710
30170.m013735 Ricinus communis 30170.m013735 I 0.706
29983.m003293 Ricinus communis 29983.m003293 I 0.706
cassava42438.valid.m1 Manihot esculenta cassava42438.valid.m1 I 0.706
XM_002893090.1 Arabidopsis lyrata fgenesh2_kg.1__2278__AT1G20880.1 I 0.706
GRMZM2G303915 Zea mays GRMZM2G303915 I 0.706
PDK_20s1420851g001 Phoenix dactylifera PDK_20s1420851g001 I 0.706
MDP0000125082 Malus x domestica MDP0000125082 I 0.706
MDP0000308970 Malus x domestica MDP0000308970 I 0.706
GRMZM2G123796 Zea mays GRMZM2G123796 I 0.706
GRMZM2G005236 Zea mays GRMZM2G005236 I 0.706
A9P7Z9_POPTR Populus trichocarpa POPTR_0010s22380 I 0.706
BRADI2G56676 Brachypodium distachyon BRADI2G56676 I 0.706
mgf016660m Mimulus guttatus mgf016660m I 0.706
SB04G030020 Sorghum bicolor Sb04g030020 I 0.706