GSVIVG00009045001 (Vitis vinifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 GSVIVG00009045001 T44630_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.794
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
GSVIVT00009045001 RRM 18 85

Links

Other RRM family RBPs
Other Vitis vinifera RBPs

100 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.941
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.926
MDP0000134468 Malus x domestica MDP0000134468 I 0.912
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.912
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.912
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.899
PK15672.1 Cannabis sativa PK15672.1 I 0.899
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.897
29908.m006046 Ricinus communis 29908.m006046 I 0.897
ppa019392m Prunus persica ppa019392m I 0.884
ppa018926m Prunus persica ppa018926m I 0.884
MDP0000233609 Malus x domestica MDP0000233609 I 0.882
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.855
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.855
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.853
MDP0000138486 Malus x domestica MDP0000138486 I 0.853
ppa009964m Prunus persica ppa009964m I 0.853
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.841
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.841
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.841
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.838
mgf017214m Mimulus guttatus mgf017214m I 0.838
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.826
XM_002890463.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001899 N 0.826
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.824
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.824
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.824
PK21213.1 Cannabis sativa PK21213.1 I 0.824
CU179634_3 Medicago truncatula CU179634_3 I 0.824
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.824
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.824
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.824
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.824
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.809
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.809
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.809
30076.m004440 Ricinus communis 30076.m004440 I 0.809
ppa009716m Prunus persica ppa009716m I 0.809
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.809
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.794
MDP0000744398 Malus x domestica MDP0000744398 I 0.794
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.794
MDP0000548950 Malus x domestica MDP0000548950 I 0.794
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.794
MDP0000488395 Malus x domestica MDP0000488395 I 0.794
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.794
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.794
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.783
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.779
ppa016222m Prunus persica ppa016222m I 0.779
PK14266.1 Cannabis sativa PK14266.1 I 0.779
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.779
MDP0000184420 Malus x domestica MDP0000184420 I 0.779
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.779
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.768
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.768
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.768
MDP0000284454 Malus x domestica MDP0000284454 I 0.765
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.765
MDP0000118777 Malus x domestica MDP0000118777 I 0.754
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.754
MDP0000857317 Malus x domestica MDP0000857317 I 0.754
LOC_Os03g14190 Oryza sativa LOC_Os03g14190 I 0.750
BGIOSIBCE008410 Oryza indica BGIOSIBCE008410 I 0.750
LOC_Os02g48340 Oryza sativa LOC_Os02g48340 I 0.750
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.750
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.750
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.739
Cucsa.160090 Cucumis sativus Cucsa.160090 I 0.739
LOC_Os06g11730 Oryza sativa LOC_Os06g11730 I 0.739
BRADI1G45540 Brachypodium distachyon BRADI1G45540 I 0.739
ppa018603m Prunus persica ppa018603m I 0.739
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.735
A9P7Z9_POPTR Populus trichocarpa POPTR_0010s22380 I 0.735
BRADI3G58710 Brachypodium distachyon BRADI3G58710 I 0.735
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.735
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.735
Cucsa.165980 Cucumis sativus Cucsa.165980 I 0.735
GRMZM2G073700 Zea mays GRMZM2G073700 I 0.725
cassava2993.m1 Manihot esculenta cassava2993.m1 I 0.721
Glyma06g14020.1 Glycine max Glyma06g14020.1 N 0.721
GRMZM2G123796 Zea mays GRMZM2G123796 I 0.721
XM_002893090.1 Arabidopsis lyrata fgenesh2_kg.1__2278__AT1G20880.1 I 0.721
GRMZM2G042195 Zea mays GRMZM2G042195 I 0.721
SB04G030020 Sorghum bicolor Sb04g030020 I 0.721
29923.m000811 Ricinus communis 29923.m000811 I 0.721
30170.m013735 Ricinus communis 30170.m013735 I 0.721
Medtr3g122940 Medicago truncatula Medtr3g122940 N 0.710
cassava6633.valid.m1 Manihot esculenta cassava6633.valid.m1 I 0.706
cassava6634.valid.m1 Manihot esculenta cassava6634.valid.m1 I 0.706
MDP0000125082 Malus x domestica MDP0000125082 I 0.706
LOC_Os01g65550 Oryza sativa LOC_Os01g65550 I 0.706
SB03G041530 Sorghum bicolor Sb03g041530 I 0.706
cassava42438.valid.m1 Manihot esculenta cassava42438.valid.m1 I 0.706
GRMZM2G019266 Zea mays GRMZM2G019266 I 0.706
MDP0000308970 Malus x domestica MDP0000308970 I 0.706
mgf016660m Mimulus guttatus mgf016660m I 0.706
BGIOSIBCE004465 Oryza indica BGIOSIBCE004465 I 0.706
GRMZM2G303915 Zea mays GRMZM2G303915 I 0.706
BRADI3G53240 Brachypodium distachyon BRADI3G53240 I 0.706