XM_002890498.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 scaffold_102598.1 T46098_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.779
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
scaffold_102598.1 RRM 15 81

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

89 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT1G22910 Arabidopsis thaliana AT1G22910-TAIR-G I 0.881
29983.m003293 Ricinus communis 29983.m003293 I 0.821
ppa009564m Prunus persica ppa009564m I 0.806
MDP0000271231 Malus x domestica MDP0000271231 N 0.806
MDP0000181802 Malus x domestica MDP0000181802 N 0.806
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.794
cassava6634.valid.m1 Manihot esculenta cassava6634.valid.m1 I 0.791
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.791
cassava6633.valid.m1 Manihot esculenta cassava6633.valid.m1 I 0.791
LjT28A08.70.nc Lotus japonicus LjT28A08.70.nc I 0.791
Medtr4g041420 Medicago truncatula Medtr4g041420 I 0.791
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.779
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.779
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.779
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.776
Glyma12g00500.1 Glycine max Glyma12g00500.1 I 0.776
Glyma09g36880.1 Glycine max Glyma09g36880.1 I 0.776
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.776
GSVIVG00037134001 Vitis vinifera GSVIVG00037134001 I 0.776
B9I875_POPTR Populus trichocarpa POPTR_0013s09120 I 0.776
XM_002329131.1 Populus trichocarpa POPTR_0019s09640 N 0.776
Cucsa.237790 Cucumis sativus Cucsa.237790 N 0.776
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.765
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.765
ppa009716m Prunus persica ppa009716m I 0.765
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.765
MDP0000184420 Malus x domestica MDP0000184420 I 0.765
MDP0000138486 Malus x domestica MDP0000138486 I 0.761
30170.m013735 Ricinus communis 30170.m013735 I 0.761
LOC_Os03g17760 Oryza sativa LOC_Os03g17760 I 0.750
PK14266.1 Cannabis sativa PK14266.1 I 0.750
mgf017214m Mimulus guttatus mgf017214m I 0.750
mgf002440m Mimulus guttatus mgf002440m N 0.746
CU179634_3 Medicago truncatula CU179634_3 I 0.746
PK21213.1 Cannabis sativa PK21213.1 I 0.746
MDP0000744398 Malus x domestica MDP0000744398 I 0.735
MDP0000548950 Malus x domestica MDP0000548950 I 0.735
MDP0000488395 Malus x domestica MDP0000488395 I 0.735
SB01G038700 Sorghum bicolor Sb01g038700 I 0.735
ppa009964m Prunus persica ppa009964m I 0.735
ppa016222m Prunus persica ppa016222m I 0.735
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.735
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.735
GRMZM2G042195 Zea mays GRMZM2G042195 I 0.735
MDP0000284454 Malus x domestica MDP0000284454 I 0.735
ppa026384m Prunus persica ppa026384m I 0.735
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.735
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.735
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.731
cassava39894.m1 Manihot esculenta cassava39894.m1 N 0.731
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.725
LOC_Os06g11730 Oryza sativa LOC_Os06g11730 I 0.725
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.725
GRMZM2G141386 Zea mays GRMZM2G141386 I 0.721
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.721
GRMZM2G123796 Zea mays GRMZM2G123796 I 0.721
LOC_Os02g48340 Oryza sativa LOC_Os02g48340 I 0.721
BGIOSIBCE008410 Oryza indica BGIOSIBCE008410 I 0.721
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.721
29908.m006046 Ricinus communis 29908.m006046 I 0.721
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.721
MDP0000125082 Malus x domestica MDP0000125082 I 0.721
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.721
30076.m004440 Ricinus communis 30076.m004440 I 0.721
SB04G030020 Sorghum bicolor Sb04g030020 I 0.721
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.721
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.721
PDK_20s1420851g001 Phoenix dactylifera PDK_20s1420851g001 I 0.716
SB03G041530 Sorghum bicolor Sb03g041530 I 0.716
LOC_Os01g65550 Oryza sativa LOC_Os01g65550 I 0.716
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.716
GRMZM2G005236 Zea mays GRMZM2G005236 I 0.716
cassava12008.valid.m1 Manihot esculenta cassava12008.valid.m1 N 0.716
GRMZM2G019266 Zea mays GRMZM2G019266 I 0.716
BGIOSIBCE004465 Oryza indica BGIOSIBCE004465 I 0.716
XM_002893090.1 Arabidopsis lyrata fgenesh2_kg.1__2278__AT1G20880.1 I 0.716
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.710
BRADI1G45540 Brachypodium distachyon BRADI1G45540 I 0.710
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.706
B9HLZ0_POPTR Populus trichocarpa POPTR_0008s04430 I 0.706
29923.m000811 Ricinus communis 29923.m000811 I 0.706
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.706
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.706
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.706
MDP0000308970 Malus x domestica MDP0000308970 I 0.706
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.701
Glyma06g14020.1 Glycine max Glyma06g14020.1 N 0.701
BRADI3G53240 Brachypodium distachyon BRADI3G53240 I 0.701
BRADI2G56676 Brachypodium distachyon BRADI2G56676 I 0.701