BGIOSIBCE008410 (Oryza indica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 BGIOSIBCE008410 T32913_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.765
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
BGIOSIBCE008410 RRM 39 106

Links

Other RRM family RBPs
Other Oryza indica RBPs

57 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os02g48340 Oryza sativa LOC_Os02g48340 I 1.000
BRADI3G53240 Brachypodium distachyon BRADI3G53240 I 0.926
GRMZM2G042195 Zea mays GRMZM2G042195 I 0.912
SB04G030020 Sorghum bicolor Sb04g030020 I 0.897
GRMZM2G123796 Zea mays GRMZM2G123796 I 0.897
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.809
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.809
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.794
mgf017214m Mimulus guttatus mgf017214m I 0.794
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.794
CU179634_3 Medicago truncatula CU179634_3 I 0.779
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.765
ppa009964m Prunus persica ppa009964m I 0.765
PK21213.1 Cannabis sativa PK21213.1 I 0.765
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.765
MDP0000138486 Malus x domestica MDP0000138486 I 0.765
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.765
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.765
MDP0000184420 Malus x domestica MDP0000184420 I 0.750
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.750
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.750
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.750
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.750
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.750
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.750
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.735
ppa009716m Prunus persica ppa009716m I 0.735
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.735
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.735
BRADI3G58710 Brachypodium distachyon BRADI3G58710 I 0.735
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.735
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.725
GRMZM2G073700 Zea mays GRMZM2G073700 I 0.725
MDP0000548950 Malus x domestica MDP0000548950 I 0.721
MDP0000308970 Malus x domestica MDP0000308970 I 0.721
MDP0000284454 Malus x domestica MDP0000284454 I 0.721
MDP0000488395 Malus x domestica MDP0000488395 I 0.721
MDP0000744398 Malus x domestica MDP0000744398 I 0.721
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.721
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.721
Glyma06g14020.1 Glycine max Glyma06g14020.1 N 0.721
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.721
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.721
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.721
GRMZM2G303915 Zea mays GRMZM2G303915 I 0.721
LOC_Os06g11730 Oryza sativa LOC_Os06g11730 I 0.710
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.710
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.710
BRADI1G45540 Brachypodium distachyon BRADI1G45540 I 0.710
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.706
MDP0000134468 Malus x domestica MDP0000134468 I 0.706
PK14266.1 Cannabis sativa PK14266.1 I 0.706
ppa026384m Prunus persica ppa026384m I 0.706
30076.m004440 Ricinus communis 30076.m004440 I 0.706
29908.m006046 Ricinus communis 29908.m006046 I 0.706
ppa016222m Prunus persica ppa016222m I 0.706
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.706