CSDA (Tursiops truncatus)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSTTRG00000008045 T17059_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.718
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.718
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.704
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.704
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.704
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTTRP00000007616 CSD 1 51

Links

Other CSD family RBPs
Other Tursiops truncatus RBPs

104 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.718
AAA49715 Xenopus laevis AAA49715 I 0.718
AAA49716 Xenopus laevis AAA49716 I 0.704
AAH41191 Xenopus laevis AAH41191 I 0.718
AAH42217 Xenopus laevis AAH42217 I 0.718
AAI06324 Xenopus laevis AAI06324 I 0.718
AAI30161 Xenopus laevis AAI30161 I 0.718
AAI55915 Xenopus laevis AAI55915 I 0.704
AAI69704 Xenopus laevis AAI69704 I 0.704
Ame_R016025 Ailuropoda melanoleuca Ame_R016025 I 0.944
Ame_R016026 Ailuropoda melanoleuca Ame_R016026 N 0.784
Ame_R019252 Ailuropoda melanoleuca Ame_R019252 I 0.962
CAA42778 Xenopus laevis CAA42778 I 0.718
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.718
CSDA Loxodonta africana ENSLAFG00000017247 I 0.729
CSDA Pan troglodytes ENSPTRG00000004681 I 0.718
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.718
CSDA Macaca mulatta ENSMMUG00000022469 I 0.718
CSDA Monodelphis domestica ENSMODG00000018248 I 0.704
Csda Mus musculus ENSMUSG00000030189 I 0.718
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.718
CSDA Oryctolagus cuniculus ENSOCUG00000001889 I 0.962
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.718
Csda Rattus norvegicus ENSRNOG00000005480 I 0.718
CSDA Sus scrofa ENSSSCG00000000633 I 0.718
CSDA Spermophilus tridecemlineatus ENSSTOG00000002108 I 0.943
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.944
CSDA Echinops telfairi ENSETEG00000002557 I 0.718
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.718
CSDA Cavia porcellus ENSCPOG00000011329 I 0.718
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.718
CSDA Homo sapiens ENSG00000060138 I 0.718
Csda Dipodomys ordii ENSDORG00000009103 I 0.718
CSDA Felis catus ENSFCAG00000018959 I 0.962
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.718
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.704
ENSCJAG00000031891 Callithrix jacchus ENSCJAG00000031891 I 0.746
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.704
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.718
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.718
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.704
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.718
ENSETEG00000004125 Echinops telfairi ENSETEG00000004125 I 0.962
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.718
ENSGGOG00000004758 Gorilla gorilla ENSGGOG00000004758 I 0.962
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.784
ENSLAFG00000031170 Loxodonta africana ENSLAFG00000031170 N 0.706
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.718
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.704
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.718
ENSOCUG00000021258 Oryctolagus cuniculus ENSOCUG00000021258 N 0.804
ENSOCUG00000022716 Oryctolagus cuniculus ENSOCUG00000022716 N 0.824
ENSOCUG00000024588 Oryctolagus cuniculus ENSOCUG00000024588 N 0.843
ENSOCUG00000026608 Oryctolagus cuniculus ENSOCUG00000026608 N 0.804
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.718
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.714
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.704
ENSSARG00000007896 Sorex araneus ENSSARG00000007896 I 0.962
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.718
LOC100065107 Equus caballus ENSECAG00000013777 I 0.718
LOC100067336 Equus caballus ENSECAG00000023592 I 0.718
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.718
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.718
P21573 Xenopus laevis P21573 I 0.718
P21574 Xenopus laevis P21574 I 0.704
Q00436 Xenopus laevis Q00436 I 0.718
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.718
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.718
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.718
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.718
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.718
YB-1 Homo sapiens ENSG00000065978 D 0.962
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.718
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.785
YBOX1_RABIT Oryctolagus cuniculus ENSOCUG00000028047 I 0.981
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.718
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.718
ybx1 Danio rerio ENSDARG00000004757 I 0.718
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.718
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.804
YBX1 Microcebus murinus ENSMICG00000014984 I 0.718
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.739
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.718
YBX1 Macropus eugenii ENSMEUG00000009893 N 0.804
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.718
Ybx1 Mus musculus ENSMUSG00000028639 I 0.718
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.718
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.718
Ybx1 Dipodomys ordii ENSDORG00000016627 N 0.784
YBX1 Procavia capensis ENSPCAG00000008397 I 0.962
YBX1 Tupaia belangeri ENSTBEG00000015642 N 0.784
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.718
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.718
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.797
YBX1 Felis catus ENSFCAG00000015376 N 0.843
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.750
YBX2 Microcebus murinus ENSMICG00000012453 I 0.961
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.891
ybx2 Xenopus tropicalis ENSXETG00000025267 N 0.745
YBX2 Oryctolagus cuniculus ENSOCUG00000015064 I 0.803
YBX2 Otolemur garnettii ENSOGAG00000004392 I 0.961
YBX2 Pteropus vampyrus ENSPVAG00000005050 N 0.843
YBX2 Vicugna pacos ENSVPAG00000003104 I 0.961
ybx2-a Xenopus laevis AAI69706 D 0.704