CpipJ_CPIJ015262 (Culex pipiens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 CpipJ_CPIJ015262 T28995_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Hrb27C
M090_0.6 		Drosophila melanogaster UAGGWUA RNAcompete
Ray et al.(2013)
RNCMPT00093 		0.794
Hrb27C
M028_0.6 		Drosophila melanogaster UAGGWWA RNAcompete
Ray et al.(2013)
RNCMPT00028 		0.794
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
CpipJ_CPIJ015262-RA RRM 21 90
CpipJ_CPIJ015262-RA RRM 111 180

Links

Other RRM family RBPs
Other Culex pipiens RBPs

20 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29005.m000257 Ricinus communis 29005.m000257 N 0.000
29585.m000588 Ricinus communis 29585.m000588 N 0.000
29876.m000260 Ricinus communis 29876.m000260 N 0.000
AT5G02530 Arabidopsis thaliana AT5G02530-TAIR-G N 0.000
AT5G59950 Arabidopsis thaliana AT5G59950-TAIR-G N 0.000
B9GER3_POPTR Populus trichocarpa POPTR_0001s24350 N 0.000
B9GUT0_POPTR Populus trichocarpa POPTR_0017s02890 N 0.000
B9HTL2_POPTR Populus trichocarpa POPTR_0010s21510 N 0.000
B9NB27_POPTR Populus trichocarpa POPTR_0016s11470 N 0.000
BGIOSIBCE007269 Oryza indica BGIOSIBCE007269 N 0.000
BGIOSIBCE007271 Oryza indica BGIOSIBCE007271 N 0.000
BGIOSIBCE010579 Oryza indica BGIOSIBCE010579 N 0.000
BGIOSIBCE027930 Oryza indica BGIOSIBCE027930 N 0.000
BRADI1G66430 Brachypodium distachyon BRADI1G66430 N 0.000
BRADI3G36320 Brachypodium distachyon BRADI3G36320 N 0.000
BRADI4G45380 Brachypodium distachyon BRADI4G45380 N 0.000
cassava30010.valid.m1 Manihot esculenta cassava30010.valid.m1 N 0.000
cassava30011.valid.m1 Manihot esculenta cassava30011.valid.m1 N 0.000
cassava30012.valid.m1 Manihot esculenta cassava30012.valid.m1 N 0.000
cassava35480.valid.m1 Manihot esculenta cassava35480.valid.m1 N 0.000
cassava37747.valid.m1 Manihot esculenta cassava37747.valid.m1 N 0.000
cassava6245.valid.m1 Manihot esculenta cassava6245.valid.m1 N 0.000
cassava6246.valid.m1 Manihot esculenta cassava6246.valid.m1 N 0.000
cassava6599.valid.m1 Manihot esculenta cassava6599.valid.m1 N 0.000
cassava9472.m1 Manihot esculenta cassava9472.m1 N 0.000
cassava9473.m1 Manihot esculenta cassava9473.m1 N 0.000
Cucsa.137040 Cucumis sativus Cucsa.137040 N 0.000
Cucsa.172290 Cucumis sativus Cucsa.172290 N 0.000
Cucsa.213420 Cucumis sativus Cucsa.213420 N 0.000
estExt_fgenesh1_pg.C_3900014 Physcomitrella patens estExt_fgenesh1_pg.C_3900014 N 0.000
e_gw1.0.323.1 Selaginella moellendorfii e_gw1.0.323.1 N 0.000
e_gw1.4.224.1 Physcomitrella patens e_gw1.4.224.1 N 0.000
e_gw1.77.52.1 Physcomitrella patens e_gw1.77.52.1 N 0.000
fgenesh1_pm.scaffold_57000010 Physcomitrella patens fgenesh1_pm.scaffold_57000010 N 0.000
fgeneshTA2_pg.C_scaffold_2000899 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_2000899 N 0.000
Glyma02g10380.1 Glycine max Glyma02g10380.1 N 0.000
Glyma11g15040.1 Glycine max Glyma11g15040.1 N 0.000
Glyma11g33670.1 Glycine max Glyma11g33670.1 N 0.000
Glyma12g07010.1 Glycine max Glyma12g07010.1 N 0.000
Glyma13g40930.1 Glycine max Glyma13g40930.1 N 0.000
Glyma18g04530.1 Glycine max Glyma18g04530.1 N 0.000
GRMZM2G019251 Zea mays GRMZM2G019251 N 0.000
GRMZM2G140352 Zea mays GRMZM2G140352 N 0.000
GRMZM2G157329 Zea mays GRMZM2G157329 N 0.000
GRMZM2G166780 Zea mays GRMZM2G166780 N 0.000
GRMZM2G171921 Zea mays GRMZM2G171921 N 0.000
GSVIVG00016588001 Vitis vinifera GSVIVG00016588001 N 0.000
GSVIVG00025009001 Vitis vinifera GSVIVG00025009001 N 0.000
GSVIVG00030785001 Vitis vinifera GSVIVG00030785001 N 0.000
gw1.1.189.1 Selaginella moellendorfii gw1.1.189.1 N 0.000
LjSGA_065336.1 Lotus japonicus LjSGA_065336.1 N 0.000
LjT41B11.50.nd Lotus japonicus LjT41B11.50.nd N 0.000
LOC_Os03g17010 Oryza sativa LOC_Os03g17010 N 0.000
LOC_Os08g33120 Oryza sativa LOC_Os08g33120 N 0.000
LOC_Os11g01020 Oryza sativa LOC_Os11g01020 N 0.000
LOC_Os12g01010 Oryza sativa LOC_Os12g01010 N 0.000
MDP0000119945 Malus x domestica MDP0000119945 N 0.000
MDP0000153894 Malus x domestica MDP0000153894 N 0.000
MDP0000202749 Malus x domestica MDP0000202749 N 0.000
MDP0000251188 Malus x domestica MDP0000251188 N 0.000
MDP0000275263 Malus x domestica MDP0000275263 N 0.000
MDP0000299639 Malus x domestica MDP0000299639 N 0.000
MDP0000320467 Malus x domestica MDP0000320467 N 0.000
Medtr3g087640 Medicago truncatula Medtr3g087640 N 0.000
Medtr3g087650 Medicago truncatula Medtr3g087650 N 0.000
Medtr4g078540 Medicago truncatula Medtr4g078540 N 0.000
Medtr7g025460 Medicago truncatula Medtr7g025460 N 0.000
mgf000319m Mimulus guttatus mgf000319m N 0.000
mgf010207m Mimulus guttatus mgf010207m N 0.000
mgf013964m Mimulus guttatus mgf013964m N 0.000
PDK_20s1300711g001 Phoenix dactylifera PDK_20s1300711g001 N 0.000
PDK_20s130094197g001 Phoenix dactylifera PDK_20s130094197g001 N 0.000
PDK_20s1328531g001 Phoenix dactylifera PDK_20s1328531g001 N 0.000
PK16300.1 Cannabis sativa PK16300.1 N 0.000
ppa009623m Prunus persica ppa009623m N 0.000
ppa010358m Prunus persica ppa010358m N 0.000
ppa014850m Prunus persica ppa014850m N 0.000
SB01G039330 Sorghum bicolor Sb01g039330 N 0.000
SB02G007020 Sorghum bicolor Sb02g007020 N 0.000
SB07G020860 Sorghum bicolor Sb07g020860 N 0.000
XM_002864614.1 Arabidopsis lyrata fgenesh2_kg.8__1946__AT5G59950.1 N 0.000
XM_002873013.1 Arabidopsis lyrata fgenesh2_kg.6__165__AT5G02530.1 N 0.000