CELF5 (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000010634 T42085_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
bru-3
M117_0.6 		Drosophila melanogaster KUGKUGU RNAcompete
Ray et al.(2013)
RNCMPT00122 		0.864
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000013547 RRM 5 73
ENSTNIP00000013547 RRM 269 339

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

64 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
62054 Helobdella robusta 62054 I 0.757
90208 Helobdella robusta 90208 I 0.752
A5A2G2_CHICK Gallus gallus ENSGALG00000002413 I 0.893
A5A2G4_CHICK Gallus gallus ENSGALG00000001966 I 0.864
AAEL014033 Aedes aegypti AAEL014033 I 0.871
AGAP004950 Anopheles gambiae AGAP004950 I 0.871
amel4_ncbi_hmm7761 Apis mellifera amel4_ncbi_hmm7761 I 0.836
BGIBMGA010431 Bombyx mori BGIBMGA010431 I 0.707
bru-3 Drosophila melanogaster FBgn0262350 D 0.864
Brunol4 Rattus norvegicus ENSRNOG00000014503 I 0.879
BRUNOL4 Taeniopygia guttata ENSTGUG00000001649 I 0.893
BRUNOL6 Homo sapiens ENSG00000140488 D 0.807
CELF2 Gorilla gorilla ENSGGOG00000009330 I 0.707
CELF2 Ornithorhynchus anatinus ENSOANG00000015432 I 0.707
CELF3 Tupaia belangeri ENSTBEG00000010130 I 0.736
CELF3 Takifugu rubripes ENSTRUG00000012064 I 0.807
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.886
CELF5 Monodelphis domestica ENSMODG00000019151 I 0.907
CELF5 Ochotona princeps ENSOPRG00000007881 I 0.857
CELF5 Takifugu rubripes ENSTRUG00000017937 I 1.000
CELF5 Macaca mulatta ENSMMUG00000015513 I 0.736
CELF5 Gorilla gorilla ENSGGOG00000002078 I 0.894
CELF5 Cavia porcellus ENSCPOG00000005740 I 0.900
CELF5 Anolis carolinensis ENSACAG00000016959 I 0.907
CELF5 Callithrix jacchus ENSCJAG00000014799 I 0.900
CELF5 Felis catus ENSFCAG00000007127 N 0.700
CELF5 Gasterosteus aculeatus ENSGACG00000012870 I 0.993
CELF6 Takifugu rubripes ENSTRUG00000012391 I 0.864
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.807
CELF6 Oryzias latipes ENSORLG00000013392 I 0.864
CELF6 Ochotona princeps ENSOPRG00000019169 I 0.814
CELF6 Gasterosteus aculeatus ENSGACG00000016626 I 0.864
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.857
Celf6 Mus musculus ENSMUSG00000032297 I 0.814
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.857
CJA07020 Caenorhabditis japonica CJA07020 I 0.750
CPIJ016329 Culex quinquefasciatus CPIJ016329 I 0.700
CpipJ_CPIJ016329 Culex pipiens CpipJ_CPIJ016329 I 0.700
ENSFCAG00000007908 Felis catus ENSFCAG00000007908 N 0.721
ENSGGOG00000023049 Gorilla gorilla ENSGGOG00000023049 I 0.814
estExt_fgenesh2_pg.C_sca_1310025 Lottia gigantea estExt_fgenesh2_pg.C_sca_1310025 I 0.757
estExt_fgenesh2_pm.C_730008 Branchiostoma floridae estExt_fgenesh2_pm.C_730008 I 0.721
FBgn0262475 Drosophila melanogaster FBgn0262475 I 0.700
GA28624-RA Drosophila pseudoobscura FBgn0249984 I 0.871
GD12651 Drosophila simulans FBgn0184378 I 0.864
GE20053 Drosophila yakuba FBgn0237378 I 0.864
GF10965 Drosophila ananassae FBgn0088005 I 0.864
GG13757 Drosophila erecta FBgn0106020 I 0.864
GH14684 Drosophila grimshawi FBgn0122160 I 0.857
GI13095 Drosophila mojavensis FBgn0135852 I 0.857
GJ13842 Drosophila virilis FBgn0201061 I 0.857
GK17101 Drosophila willistoni FBgn0219100 I 0.864
GL21647 Drosophila persimilis FBgn0159240 I 0.850
GM24582 Drosophila sechellia FBgn0179445 I 0.864
HEXA Macaca mulatta ENSMMUG00000010687 I 0.807
LOAG_05508 Loa loa LOAG_05508 I 0.814
LOC100391960 Callithrix jacchus ENSCJAG00000020663 I 0.707
LOC100414308 Callithrix jacchus ENSCJAG00000018355 I 0.807
nasonia_NCBI_hmm496514 Nasonia vitripennis nasonia_NCBI_hmm496514 I 0.843
PHUM315130 Pediculus humanus PHUM315130 I 0.871
Q2KI16_BOVIN Bos taurus ENSBTAG00000008937 I 0.707
Sjc_0024790 Schistosoma japonicum Sjc_0024790 I 0.793
Smp_041280 Schistosoma mansoni Smp_041280 I 0.836
Smp_131780 Schistosoma mansoni Smp_131780 I 0.786