Q1KKS6_FUGRU (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000017504 T42377_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.789
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.789
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.789
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.768
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.754
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000044873 RRM 15 84
ENSTRUP00000044873 RRM 106 177
ENSTRUP00000044874 RRM 16 85
ENSTRUP00000044874 RRM 107 178
ENSTRUP00000044875 RRM 15 84
ENSTRUP00000044875 RRM 106 177
ENSTRUP00000044876 RRM 15 84
ENSTRUP00000044876 RRM 106 174

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

181 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA49741 Xenopus laevis AAA49741 I 0.768
AAA49742 Xenopus laevis AAA49742 I 0.768
AAA49948 Xenopus laevis AAA49948 I 0.000
AAA49949 Xenopus laevis AAA49949 I 0.796
AAA49950 Xenopus laevis AAA49950 I 0.817
AAB59951 Xenopus laevis AAB59951 I 0.000
AAH43750 Xenopus laevis AAH43750 I 0.000
AAH45260 Xenopus laevis AAH45260 I 0.782
AAH46692 Xenopus laevis AAH46692 I 0.000
AAH72090 Xenopus laevis AAH72090 I 0.782
AAI06633 Xenopus laevis AAI06633 I 0.000
AAI69881 Xenopus laevis AAI69881 I 0.817
Ame_R000626 Ailuropoda melanoleuca Ame_R000626 I 0.000
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.789
CBF67555 Xenopus laevis CBF67555 I 0.768
CBF67577 Xenopus laevis CBF67577 I 0.000
CBF67578 Xenopus laevis CBF67578 I 0.817
CBF67672 Xenopus laevis CBF67672 I 0.782
CBU92428 Xenopus laevis CBU92428 I 0.768
CBU92450 Xenopus laevis CBU92450 I 0.000
CBU92451 Xenopus laevis CBU92451 I 0.817
CBU92546 Xenopus laevis CBU92546 I 0.782
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.754
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.796
ENSBTAG00000011195 Bos taurus ENSBTAG00000011195 I 0.000
ENSBTAG00000020849 Bos taurus ENSBTAG00000020849 I 0.000
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.000
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.746
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.782
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.722
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.000
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.818
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.000
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.715
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.714
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.715
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.789
ENSCJAG00000021872 Callithrix jacchus ENSCJAG00000021872 I 0.000
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.761
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.768
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.789
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.818
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.768
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.789
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.775
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.789
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.789
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.796
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.782
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.782
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.796
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.768
ENSMEUG00000001084 Macropus eugenii ENSMEUG00000001084 I 0.000
ENSMEUG00000014479 Macropus eugenii ENSMEUG00000014479 I 0.000
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.789
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.789
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.775
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.818
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.761
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.782
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.789
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.782
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.782
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.782
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.761
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.775
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.782
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.789
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.775
ENSOGAG00000002398 Otolemur garnettii ENSOGAG00000002398 I 0.000
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.768
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.782
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.789
ENSPPYG00000017715 Pongo pygmaeus ENSPPYG00000017715 I 0.000
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.754
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.789
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.736
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.754
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.789
ENSSSCG00000012503 Sus scrofa ENSSSCG00000012503 I 0.000
ENSSSCG00000013557 Sus scrofa ENSSSCG00000013557 I 0.000
ENSSSCG00000013561 Sus scrofa ENSSSCG00000013561 I 0.000
ENSSSCG00000013607 Sus scrofa ENSSSCG00000013607 I 0.000
ENSSSCG00000015836 Sus scrofa ENSSSCG00000015836 I 0.000
ENSSSCG00000016710 Sus scrofa ENSSSCG00000016710 I 0.000
ENSSTOG00000006202 Spermophilus tridecemlineatus ENSSTOG00000006202 I 0.000
ENSSTOG00000009092 Spermophilus tridecemlineatus ENSSTOG00000009092 I 0.000
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.789
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.803
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.789
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.789
HNRNPA1 Homo sapiens ENSG00000135486 D 0.789
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.789
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.782
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.789
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.768
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.789
Hnrnpa2b1 Dipodomys ordii ENSDORG00000005482 I 0.000
HNRNPA2B1 Dasypus novemcinctus ENSDNOG00000012928 I 0.000
Hnrnpa2b1 Rattus norvegicus ENSRNOG00000011175 I 0.000
HNRNPA2B1 Ochotona princeps ENSOPRG00000011698 I 0.000
HNRNPA2B1 Homo sapiens ENSG00000122566 D 0.000
HNRNPA2B1 Taeniopygia guttata ENSTGUG00000002869 I 0.000
HNRNPA2B1 Echinops telfairi ENSETEG00000018577 I 0.000
HNRNPA2B1 Pteropus vampyrus ENSPVAG00000006296 I 0.000
HNRNPA2B1 Tupaia belangeri ENSTBEG00000003219 I 0.000
HNRNPA2B1 Pan troglodytes ENSPTRG00000019002 I 0.000
HNRNPA2B1 Tursiops truncatus ENSTTRG00000000709 I 0.000
HNRNPA2B1 Oryctolagus cuniculus ENSOCUG00000026859 I 0.000
HNRNPA2B1 Anolis carolinensis ENSACAG00000012992 I 0.000
HNRNPA2B1 Canis familiaris ENSCAFG00000002885 I 0.000
HNRNPA2B1 Choloepus hoffmanni ENSCHOG00000013832 I 0.000
HNRNPA2B1 Monodelphis domestica ENSMODG00000000603 I 0.000
HNRNPA2B1 Macaca mulatta ENSMMUG00000003619 I 0.000
Hnrnpa2b1 Mus musculus ENSMUSG00000004980 I 0.000
HNRNPA2B1 Myotis lucifugus ENSMLUG00000007578 I 0.000
HNRNPA2B1 Ornithorhynchus anatinus ENSOANG00000009159 I 0.000
HNRNPA2B1 Meleagris gallopavo ENSMGAG00000010635 I 0.000
hnrnpa2b1 Xenopus tropicalis ENSXETG00000012170 I 0.000
HNRNPA2B1 Loxodonta africana ENSLAFG00000006902 I 0.000
HNRNPA2B1 Vicugna pacos ENSVPAG00000010417 I 0.000
HNRNPA2B1 Gorilla gorilla ENSGGOG00000017072 I 0.000
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.818
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.818
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.859
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.818
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.818
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.817
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.803
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.818
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.824
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.817
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.818
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.818
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.818
HNRNPA3 Homo sapiens ENSG00000170144 I 0.818
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.894
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.817
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.818
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.818
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.818
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.817
LOC100054206 Equus caballus ENSECAG00000006699 I 0.701
LOC100066794 Equus caballus ENSECAG00000023237 I 0.817
LOC100068539 Equus caballus ENSECAG00000000782 I 0.000
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.818
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.789
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.782
LOC100401647 Callithrix jacchus ENSCJAG00000007908 I 0.000
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.768
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.768
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.818
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.768
LOC516616 Bos taurus ENSBTAG00000002284 I 0.000
LOC538435 Bos taurus ENSBTAG00000038680 I 0.000
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.789
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.789
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.768
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.782
LOC781499 Bos taurus ENSBTAG00000021580 I 0.818
LOC785445 Bos taurus ENSBTAG00000025621 I 0.755
P17130 Xenopus laevis P17130 I 0.768
P51968 Xenopus laevis P51968 I 0.796
P51989 Xenopus laevis P51989 I 0.000
P51990 Xenopus laevis P51990 I 0.000
P51992 Xenopus laevis P51992 I 0.817
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.803
Q5ZME1_CHICK Gallus gallus ENSGALG00000011036 I 0.000
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.789
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.789
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.768
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.789
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.789
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.789
ROA2_BOVIN Bos taurus ENSBTAG00000005726 I 0.000
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.818
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.789
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.000
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.768
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.754
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.754