Q1KKS6_FUGRU (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000017504 T42377_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.789
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.789
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.789
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.768
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.754
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000044873 RRM 15 84
ENSTRUP00000044873 RRM 106 177
ENSTRUP00000044874 RRM 16 85
ENSTRUP00000044874 RRM 107 178
ENSTRUP00000044875 RRM 15 84
ENSTRUP00000044875 RRM 106 177
ENSTRUP00000044876 RRM 15 84
ENSTRUP00000044876 RRM 106 174

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

181 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
HNRNPA3 Tetraodon nigroviridis ENSTNIG00000016958 I 0.958
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.894
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.866
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.859
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.824
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.818
HNRNPA3 Homo sapiens ENSG00000170144 I 0.818
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.818
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.818
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.818
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.818
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.818
LOC781499 Bos taurus ENSBTAG00000021580 I 0.818
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.818
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.818
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.818
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.818
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.818
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.818
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.818
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.818
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.818
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.818
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.818
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.817
LOC100066794 Equus caballus ENSECAG00000023237 I 0.817
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.817
Gm8991 Mus musculus ENSMUSG00000059179 I 0.817
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.817
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.817
CBU92451 Xenopus laevis CBU92451 I 0.817
P51992 Xenopus laevis P51992 I 0.817
CBF67578 Xenopus laevis CBF67578 I 0.817
AAA49950 Xenopus laevis AAA49950 I 0.817
AAI69881 Xenopus laevis AAI69881 I 0.817
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.811
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.803
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.803
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.803
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.803
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.796
P51968 Xenopus laevis P51968 I 0.796
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.796
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.796
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.796
AAA49949 Xenopus laevis AAA49949 I 0.796
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.789
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.789
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.789
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.789
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.789
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.789
HNRNPA1 Homo sapiens ENSG00000135486 D 0.789
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.789
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.789
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.789
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.789
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.789
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.789
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.789
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.789
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.789
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.789
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.789
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.789
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.789
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.789
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.789
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.789
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.789
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.789
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.789
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.789
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.789
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.789
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.783
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.782
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.782
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.782
CBU92546 Xenopus laevis CBU92546 I 0.782
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.782
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.782
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.782
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.782
CBF67672 Xenopus laevis CBF67672 I 0.782
AAH45260 Xenopus laevis AAH45260 I 0.782
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.782
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.782
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.782
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.782
AAH72090 Xenopus laevis AAH72090 I 0.782
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.782
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.776
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.775
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.775
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.775
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.775
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.769
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.769
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.768
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.768
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.768
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.768
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.768
CBF67555 Xenopus laevis CBF67555 I 0.768
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.768
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.768
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.768
AAA49742 Xenopus laevis AAA49742 I 0.768
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.768
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.768
P17130 Xenopus laevis P17130 I 0.768
CBU92428 Xenopus laevis CBU92428 I 0.768
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.768
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.768
AAA49741 Xenopus laevis AAA49741 I 0.768
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.761
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.761
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.761
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.761
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.761
LOC785445 Bos taurus ENSBTAG00000025621 I 0.755
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.754
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.754
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.754
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.754
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.754
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.754
D4A8U2_RAT Rattus norvegicus ENSRNOG00000007252 I 0.750
Ame_R015370 Ailuropoda melanoleuca Ame_R015370 I 0.748
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.748
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.746
HNRNPA3 Microcebus murinus ENSMICG00000005513 I 0.746
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.746
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.746
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.741
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.741
ENSDORG00000011155 Dipodomys ordii ENSDORG00000011155 I 0.741
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.741
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.741
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.741
ENSRNOG00000030901 Rattus norvegicus ENSRNOG00000030901 I 0.739
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.739
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.739
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.739
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.736
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.734
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.734
zgc:66127 Danio rerio ENSDARG00000011020 I 0.732
ENSCJAG00000006928 Callithrix jacchus ENSCJAG00000006928 I 0.732
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.727
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.727
ENSPPYG00000016683 Pongo pygmaeus ENSPPYG00000016683 I 0.725
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.725
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.722
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.720
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.720
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.720
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.720
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.720
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.720
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.718
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.718
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.715
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.715
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.714
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.713
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.713
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.713
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.713
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.713
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.708
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.708
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.706
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.706
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.706
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.703
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.701
LOC100054206 Equus caballus ENSECAG00000006699 I 0.701
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.701