CELF5 (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000017937 T42384_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
bru-3
M117_0.6 		Drosophila melanogaster KUGKUGU RNAcompete
Ray et al.(2013)
RNCMPT00122 		0.864
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000045983 RRM 5 73
ENSTRUP00000045983 RRM 301 371
ENSTRUP00000045984 RRM 5 73
ENSTRUP00000045984 RRM 299 369
ENSTRUP00000045985 RRM 5 73
ENSTRUP00000045985 RRM 290 360
ENSTRUP00000045986 RRM 5 73
ENSTRUP00000045986 RRM 284 354
ENSTRUP00000045987 RRM 5 73
ENSTRUP00000045987 RRM 283 353
ENSTRUP00000045988 RRM 5 73
ENSTRUP00000045988 RRM 275 345
ENSTRUP00000045989 RRM 4 72
ENSTRUP00000045989 RRM 276 346
ENSTRUP00000045990 RRM 13 59
ENSTRUP00000045990 RRM 261 331

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

67 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
136083 Helobdella robusta 136083 I 0.000
62054 Helobdella robusta 62054 I 0.757
90208 Helobdella robusta 90208 I 0.752
A5A2G2_CHICK Gallus gallus ENSGALG00000002413 I 0.893
A5A2G4_CHICK Gallus gallus ENSGALG00000001966 I 0.864
AAA81375 Xenopus laevis AAA81375 I 0.000
AAEL003979 Aedes aegypti AAEL003979 I 0.000
AAEL014033 Aedes aegypti AAEL014033 I 0.871
AAH46942 Xenopus laevis AAH46942 I 0.000
AAH57704 Xenopus laevis AAH57704 I 0.000
AAH72134 Xenopus laevis AAH72134 I 0.000
ACH69784 Xenopus laevis ACH69784 I 0.000
ACH69785 Xenopus laevis ACH69785 I 0.000
AGAP004950 Anopheles gambiae AGAP004950 I 0.871
amel4_ncbi_hmm2201 Apis mellifera amel4_ncbi_hmm2201 I 0.000
amel4_ncbi_hmm7761 Apis mellifera amel4_ncbi_hmm7761 I 0.836
Ame_R007421 Ailuropoda melanoleuca Ame_R007421 I 0.000
Ame_R007822 Ailuropoda melanoleuca Ame_R007822 I 0.000
Ame_R011948 Ailuropoda melanoleuca Ame_R011948 I 0.000
B7NZE2_RABIT Oryctolagus cuniculus ENSOCUG00000003551 I 0.000
BGIBMGA005893 Bombyx mori BGIBMGA005893 I 0.000
Bm1_27610 Brugia malayi Bm1_27610 I 0.000
bru-3 Drosophila melanogaster FBgn0262350 D 0.864
Brunol4 Rattus norvegicus ENSRNOG00000014503 I 0.879
BRUNOL4 Taeniopygia guttata ENSTGUG00000001649 I 0.893
BRUNOL4 Homo sapiens ENSG00000101489 D 0.000
BRUNOL5 Homo sapiens ENSG00000161082 D 0.000
BRUNOL6 Homo sapiens ENSG00000140488 D 0.807
Brunol6 Rattus norvegicus ENSRNOG00000010817 I 0.000
CBG15358 Caenorhabditis briggsae CBG15358 I 0.000
CELF3 Monodelphis domestica ENSMODG00000018897 I 0.000
CELF3 Macaca mulatta ENSMMUG00000016952 I 0.720
CELF3 Takifugu rubripes ENSTRUG00000014225 I 0.000
CELF3 Loxodonta africana ENSLAFG00000030147 I 0.000
CELF3 Ochotona princeps ENSOPRG00000011130 I 0.000
CELF3 Oryzias latipes ENSORLG00000010447 I 0.000
CELF3 Tetraodon nigroviridis ENSTNIG00000001919 I 0.000
CELF3 Procavia capensis ENSPCAG00000001623 I 0.000
CELF3 Pan troglodytes ENSPTRG00000001293 I 0.000
CELF3 Takifugu rubripes ENSTRUG00000012064 I 0.807
CELF3 Sus scrofa ENSSSCG00000006618 I 0.000
CELF3 Tupaia belangeri ENSTBEG00000010130 I 0.736
CELF3 Tetraodon nigroviridis ENSTNIG00000008062 I 0.000
Celf3 Mus musculus ENSMUSG00000028137 I 0.000
CELF3 Gasterosteus aculeatus ENSGACG00000003274 I 0.000
CELF3 Homo sapiens ENSG00000159409 I 0.000
CELF3 Cavia porcellus ENSCPOG00000003539 I 0.000
CELF3 Gasterosteus aculeatus ENSGACG00000011707 I 0.000
CELF3 Callithrix jacchus ENSCJAG00000007857 I 0.000
CELF3 Danio rerio ENSDARG00000006983 I 0.000
celf3 Danio rerio ENSDARG00000034668 I 0.000
CELF3 Canis familiaris ENSCAFG00000012794 I 0.000
CELF3 Equus caballus ENSECAG00000020365 I 0.000
CELF3_BOVIN Bos taurus ENSBTAG00000019131 I 0.000
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.886
CELF4 Gorilla gorilla ENSGGOG00000013920 I 0.000
CELF4 Oryzias latipes ENSORLG00000008913 I 0.000
CELF4 Oryctolagus cuniculus ENSOCUG00000024790 I 0.000
CELF4 Takifugu rubripes ENSTRUG00000015481 I 0.000
CELF4 Tursiops truncatus ENSTTRG00000016826 I 0.000
CELF4 Gasterosteus aculeatus ENSGACG00000008752 I 0.000
Celf4 Mus musculus ENSMUSG00000024268 I 0.000
celf4 Xenopus tropicalis ENSXETG00000020486 I 0.000
CELF4 Pteropus vampyrus ENSPVAG00000009204 I 0.000
CELF5 Cavia porcellus ENSCPOG00000005740 I 0.900
CELF5 Pan troglodytes ENSPTRG00000010259 I 0.000
CELF5 Oryzias latipes ENSORLG00000004600 I 0.000
CELF5 Tetraodon nigroviridis ENSTNIG00000010634 I 1.000
CELF5 Ochotona princeps ENSOPRG00000007881 I 0.857
CELF5 Anolis carolinensis ENSACAG00000016959 I 0.907
CELF5 Callithrix jacchus ENSCJAG00000014799 I 0.900
CELF5 Macaca mulatta ENSMMUG00000015513 I 0.736
CELF5 Gasterosteus aculeatus ENSGACG00000012870 I 0.993
celf5 Xenopus tropicalis ENSXETG00000014344 I 0.000
CELF5 Monodelphis domestica ENSMODG00000019151 I 0.907
CELF5 Gorilla gorilla ENSGGOG00000002078 I 0.894
celf5 Danio rerio ENSDARG00000071375 I 0.000
CELF6 Takifugu rubripes ENSTRUG00000012391 I 0.864
CELF6 Cavia porcellus ENSCPOG00000025842 I 0.000
CELF6 Tursiops truncatus ENSTTRG00000002503 I 0.000
CELF6 Bos taurus ENSBTAG00000014092 I 0.000
CELF6 Anolis carolinensis ENSACAG00000006079 I 0.000
CELF6 Sus scrofa ENSSSCG00000001928 I 0.000
CELF6 Oryzias latipes ENSORLG00000013392 I 0.864
CELF6 Meleagris gallopavo ENSMGAG00000001804 I 0.000
CELF6 Gasterosteus aculeatus ENSGACG00000016626 I 0.864
CELF6 Loxodonta africana ENSLAFG00000020985 I 0.000
CELF6 Gorilla gorilla ENSGGOG00000015463 I 0.000
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.857
Celf6 Mus musculus ENSMUSG00000032297 I 0.814
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.857
CELF6 Oryctolagus cuniculus ENSOCUG00000021663 I 0.000
CELF6 Ochotona princeps ENSOPRG00000019169 I 0.814
Celf6 Dipodomys ordii ENSDORG00000004882 I 0.000
CELF6 Felis catus ENSFCAG00000016249 I 0.000
CELF6 Pteropus vampyrus ENSPVAG00000006406 I 0.000
CJA07020 Caenorhabditis japonica CJA07020 I 0.750
CRE09771 Caenorhabditis remanei CRE09771 I 0.000
D4A916_RAT Rattus norvegicus ENSRNOG00000020875 I 0.000
ENSFCAG00000007908 Felis catus ENSFCAG00000007908 N 0.721
ENSGGOG00000021973 Gorilla gorilla ENSGGOG00000021973 I 0.000
ENSGGOG00000023049 Gorilla gorilla ENSGGOG00000023049 I 0.814
ENSPPYG00000006615 Pongo pygmaeus ENSPPYG00000006615 I 0.000
ENSPPYG00000009118 Pongo pygmaeus ENSPPYG00000009118 I 0.000
ENSXETG00000021745 Xenopus tropicalis ENSXETG00000021745 I 0.000
estExt_fgenesh2_pg.C_sca_1310025 Lottia gigantea estExt_fgenesh2_pg.C_sca_1310025 I 0.757
estExt_Genewise1Plus.C_6380019 Capitella teleta estExt_Genewise1Plus.C_6380019 I 0.000
etr-1 Caenorhabditis elegans T01D1.2 D 0.000
e_gw.982.9.1 Nematostella vectensis e_gw.982.9.1 I 0.000
fgenesh2_pm.scaffold_186000008 Branchiostoma floridae fgenesh2_pm.scaffold_186000008 I 0.000
GA28624-RA Drosophila pseudoobscura FBgn0249984 I 0.871
GD12651 Drosophila simulans FBgn0184378 I 0.864
GD23834 Drosophila simulans FBgn0195204 I 0.000
GE20053 Drosophila yakuba FBgn0237378 I 0.864
GF10965 Drosophila ananassae FBgn0088005 I 0.864
GF19661 Drosophila ananassae FBgn0096668 I 0.000
GG13757 Drosophila erecta FBgn0106020 I 0.864
GG23781 Drosophila erecta FBgn0115920 I 0.000
GH14684 Drosophila grimshawi FBgn0122160 I 0.857
GI13095 Drosophila mojavensis FBgn0135852 I 0.857
GI17947 Drosophila mojavensis FBgn0140687 I 0.000
GJ13842 Drosophila virilis FBgn0201061 I 0.857
GK17101 Drosophila willistoni FBgn0219100 I 0.864
GL21647 Drosophila persimilis FBgn0159240 I 0.850
GM24582 Drosophila sechellia FBgn0179445 I 0.864
GM26796 Drosophila sechellia FBgn0181649 I 0.000
gw1.77.52.1 Daphnia pulex gw1.77.52.1 I 0.000
HEXA Macaca mulatta ENSMMUG00000010687 I 0.807
ISCW008885 Ixodes scapularis ISCW008885 I 0.000
ISCW010799 Ixodes scapularis ISCW010799 I 0.000
LOAG_05508 Loa loa LOAG_05508 I 0.814
LOC100386457 Callithrix jacchus ENSCJAG00000021135 I 0.000
LOC100391960 Callithrix jacchus ENSCJAG00000020663 I 0.707
LOC100414308 Callithrix jacchus ENSCJAG00000018355 I 0.807
nasonia_NCBI_hmm496514 Nasonia vitripennis nasonia_NCBI_hmm496514 I 0.843
NCBI_GNO_268900001 Daphnia pulex NCBI_GNO_268900001 I 0.000
PHUM315130 Pediculus humanus PHUM315130 I 0.871
Ppa-etr-1 Pristionchus pacificus PPA28330 I 0.000
Q7ZWM3 Xenopus laevis Q7ZWM3 I 0.000
Q91579 Xenopus laevis Q91579 I 0.000
Sjc_0024790 Schistosoma japonicum Sjc_0024790 I 0.793
Smp_041280 Schistosoma mansoni Smp_041280 I 0.836
Smp_131780 Schistosoma mansoni Smp_131780 I 0.786
SNAPOd2T00007754001 Oikopleura dioica SNAPOd2T00007754001 I 0.000
unc-75 Caenorhabditis elegans C17D12.2 D 0.000
WUBG_04928 Wuchereria bancrofti WUBG_04928 I 0.000