fgeneshTA2_pg.C_scaffold_2000867 (Trichoplax adhaerens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgeneshTA2_pg.C_scaffold_2000867 T52512_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
A2BP1
M298_0.6 		Homo sapiens UGCAUG SELEX
Cook et al.(2011)
37_16537540 		0.710
A2BP1
M159_0.6 		Homo sapiens WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00168 		0.710
a2bp1
M118_0.6 		Drosophila melanogaster UGCAUG RNAcompete
Ray et al.(2013)
RNCMPT00123 		0.710
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
fgeneshTA2_pg.C_scaffold_2000867 RRM 131 199

Links

Other RRM family RBPs
Other Trichoplax adhaerens RBPs

80 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A2BP1 Taeniopygia guttata ENSTGUG00000004562 I 0.710
a2bp1 Danio rerio ENSDARG00000014746 D 0.000
A2bp1 Rattus norvegicus ENSRNOG00000002827 I 0.710
a2bp1 Drosophila melanogaster FBgn0052062 D 0.710
A2BP1 Homo sapiens ENSG00000078328 D 0.710
A2BP1 Gallus gallus ENSGALG00000007366 I 0.710
A2D690_MACMU Macaca mulatta ENSMMUG00000014010 I 0.710
A4F5G6 Xenopus laevis A4F5G6 I 0.000
AAEL017168 Aedes aegypti AAEL017168 I 0.710
AAI55921 Xenopus laevis AAI55921 I 0.000
AAI69563 Xenopus laevis AAI69563 I 0.000
AGAP006089 Anopheles gambiae AGAP006089 I 0.710
amel4_ncbi_hmm20735 Apis mellifera amel4_ncbi_hmm20735 I 0.710
Ame_R006420 Ailuropoda melanoleuca Ame_R006420 I 0.000
Ame_R020997 Ailuropoda melanoleuca Ame_R020997 I 0.710
asd-1 Caenorhabditis elegans R74.5 D 0.000
BGIBMGA006880 Bombyx mori BGIBMGA006880 I 0.710
Bm1_08900 Brugia malayi Bm1_08900 I 0.000
CAL91350 Xenopus laevis CAL91350 I 0.000
CAL91351 Xenopus laevis CAL91351 I 0.000
CBG02108 Caenorhabditis briggsae CBG02108 I 0.000
CBG20166 Caenorhabditis briggsae CBG20166 I 0.000
CBN09445 Caenorhabditis brenneri CBN09445 I 0.000
CBN11651 Caenorhabditis brenneri CBN11651 I 0.000
CJA09998 Caenorhabditis japonica CJA09998 I 0.000
CJA17900 Caenorhabditis japonica CJA17900 I 0.000
CRE07377 Caenorhabditis remanei CRE07377 I 0.000
DGIL_AUG5s15027g5t1 Acyrtosiphon pisum DGIL_AUG5s15027g5t1 I 0.000
ENSACAG00000011931 Anolis carolinensis ENSACAG00000011931 I 0.000
ENSACAG00000016093 Anolis carolinensis ENSACAG00000016093 I 0.000
ENSCING00000013912 Ciona intestinalis ENSCING00000013912 I 0.000
ENSDARG00000074310 Danio rerio ENSDARG00000074310 I 0.000
ENSGACG00000002138 Gasterosteus aculeatus ENSGACG00000002138 I 0.000
ENSGACG00000007174 Gasterosteus aculeatus ENSGACG00000007174 I 0.000
ENSGACG00000010757 Gasterosteus aculeatus ENSGACG00000010757 I 0.000
ENSGACG00000015968 Gasterosteus aculeatus ENSGACG00000015968 I 0.000
ENSMGAG00000005600 Meleagris gallopavo ENSMGAG00000005600 I 0.000
ENSMODG00000002089 Monodelphis domestica ENSMODG00000002089 I 0.000
ENSORLG00000011269 Oryzias latipes ENSORLG00000011269 I 0.000
ENSORLG00000014948 Oryzias latipes ENSORLG00000014948 I 0.710
ENSPPYG00000007079 Pongo pygmaeus ENSPPYG00000007079 I 0.710
ENSPPYG00000008704 Pongo pygmaeus ENSPPYG00000008704 I 0.000
ENSPPYG00000011766 Pongo pygmaeus ENSPPYG00000011766 I 0.710
ENSTNIG00000008088 Tetraodon nigroviridis ENSTNIG00000008088 I 0.000
ENSTNIG00000011278 Tetraodon nigroviridis ENSTNIG00000011278 I 0.000
ENSTRUG00000002748 Takifugu rubripes ENSTRUG00000002748 I 0.710
ENSTRUG00000004894 Takifugu rubripes ENSTRUG00000004894 I 0.000
ENSTRUG00000007739 Takifugu rubripes ENSTRUG00000007739 I 0.710
ENSTRUG00000015905 Takifugu rubripes ENSTRUG00000015905 I 0.000
e_gw.493.13.1 Branchiostoma floridae e_gw.493.13.1 I 0.000
e_gw.534.13.1 Branchiostoma floridae e_gw.534.13.1 I 0.000
fox-1 Caenorhabditis elegans T07D1.4 D 0.000
FOX1A_BOVIN Bos taurus ENSBTAG00000007210 I 0.710
FOX1C_BOVIN Bos taurus ENSBTAG00000006280 I 0.000
FP236187.1 Danio rerio ENSDARG00000010083 I 0.000
GA23828-RA Drosophila pseudoobscura FBgn0245227 I 0.000
GD14245 Drosophila simulans FBgn0185930 I 0.710
GE21749 Drosophila yakuba FBgn0238995 I 0.710
GF10597 Drosophila ananassae FBgn0087638 I 0.710
GG15438 Drosophila erecta FBgn0107689 I 0.710
GH14949 Drosophila grimshawi FBgn0122424 I 0.710
GI11474 Drosophila mojavensis FBgn0134235 I 0.725
GJ13667 Drosophila virilis FBgn0200888 I 0.725
GK12272 Drosophila willistoni FBgn0214282 I 0.710
GM25214 Drosophila sechellia FBgn0180074 I 0.710
gw1.6.723.1 Daphnia pulex gw1.6.723.1 I 0.000
Hrnbp3 Rattus norvegicus ENSRNOG00000003386 I 0.000
hrnbp3 Xenopus tropicalis ENSXETG00000020236 I 0.000
ISCW013123 Ixodes scapularis ISCW013123 I 0.000
LOAG_04679 Loa loa LOAG_04679 I 0.000
LOC100066233 Equus caballus ENSECAG00000012667 I 0.710
LOC100069362 Equus caballus ENSECAG00000018923 I 0.710
LOC100385643 Callithrix jacchus ENSCJAG00000019456 I 0.710
LOC100414323 Callithrix jacchus ENSCJAG00000017351 I 0.710
LOC708209 Macaca mulatta ENSMMUG00000003458 I 0.710
nasonia_NCBI_hmm28684 Nasonia vitripennis nasonia_NCBI_hmm28684 I 0.000
PHUM098700 Pediculus humanus PHUM098700 I 0.710
RBFOX1 Spermophilus tridecemlineatus ENSSTOG00000000322 I 0.710
RBFOX1 Sus scrofa ENSSSCG00000007917 I 0.710
RBFOX1 Tupaia belangeri ENSTBEG00000009169 I 0.710
RBFOX1 Tursiops truncatus ENSTTRG00000005700 I 0.710
RBFOX1 Pteropus vampyrus ENSPVAG00000013467 I 0.710
RBFOX1 Dasypus novemcinctus ENSDNOG00000012760 I 0.710
RBFOX1 Vicugna pacos ENSVPAG00000001284 I 0.710
RBFOX1 Cavia porcellus ENSCPOG00000011314 I 0.710
RBFOX1 Takifugu rubripes ENSTRUG00000013477 I 0.000
RBFOX1 Choloepus hoffmanni ENSCHOG00000012843 I 0.710
RBFOX1 Canis familiaris ENSCAFG00000019082 I 0.710
RBFOX1 Anolis carolinensis ENSACAG00000004013 I 0.710
RBFOX1 Pan troglodytes ENSPTRG00000007744 I 0.710
RBFOX1 Monodelphis domestica ENSMODG00000005826 I 0.710
RBFOX1 Ornithorhynchus anatinus ENSOANG00000002379 I 0.710
RBFOX1 Gorilla gorilla ENSGGOG00000016871 I 0.710
RBFOX1 Loxodonta africana ENSLAFG00000011480 I 0.710
RBFOX1 Ochotona princeps ENSOPRG00000006199 I 0.710
RBFOX1 Macropus eugenii ENSMEUG00000012525 I 0.710
RBFOX1 Otolemur garnettii ENSOGAG00000000363 I 0.710
RBFOX1 Procavia capensis ENSPCAG00000002630 I 0.710
RBFOX1 Myotis lucifugus ENSMLUG00000015896 I 0.710
Rbfox1 Mus musculus ENSMUSG00000008658 I 0.710
RBFOX1 Meleagris gallopavo ENSMGAG00000008606 I 0.710
RBFOX1 Oryctolagus cuniculus ENSOCUG00000001205 I 0.710
rbfox1l Danio rerio ENSDARG00000021184 I 0.000
RBFOX2 Vicugna pacos ENSVPAG00000002824 I 0.710
RBFOX2 Canis familiaris ENSCAFG00000001701 I 0.710
RBFOX2 Otolemur garnettii ENSOGAG00000015996 I 0.710
RBFOX2 Ornithorhynchus anatinus ENSOANG00000007489 I 0.710
RBFOX2 Loxodonta africana ENSLAFG00000027140 I 0.710
Rbfox2 Mus musculus ENSMUSG00000033565 I 0.710
RBFOX2 Monodelphis domestica ENSMODG00000001122 I 0.710
RBFOX2 Choloepus hoffmanni ENSCHOG00000002887 I 0.710
RBFOX2 Myotis lucifugus ENSMLUG00000002676 I 0.710
RBFOX2 Anolis carolinensis ENSACAG00000016535 I 0.710
RBFOX2 Tursiops truncatus ENSTTRG00000006922 I 0.710
RBFOX2 Pan troglodytes ENSPTRG00000014305 I 0.710
RBFOX2 Tupaia belangeri ENSTBEG00000003297 I 0.710
RBFOX2 Sus scrofa ENSSSCG00000000152 I 0.710
RBFOX2 Ochotona princeps ENSOPRG00000014878 I 0.710
RBFOX2 Homo sapiens ENSG00000100320 I 0.710
Rbfox2 Dipodomys ordii ENSDORG00000015003 I 0.710
RBFOX2 Echinops telfairi ENSETEG00000005638 I 0.710
RBFOX2 Cavia porcellus ENSCPOG00000022180 I 0.710
RBFOX2 Tarsius syrichta ENSTSYG00000014123 I 0.710
RBFOX3 Erinaceus europaeus ENSEEUG00000013974 I 0.000
RBFOX3 Pteropus vampyrus ENSPVAG00000015243 I 0.000
RBFOX3 Myotis lucifugus ENSMLUG00000008895 I 0.000
RBFOX3 Homo sapiens ENSG00000167281 I 0.000
RBFOX3 Canis familiaris ENSCAFG00000005547 I 0.000
RBFOX3 Pan troglodytes ENSPTRG00000009727 I 0.000
RBFOX3 Microcebus murinus ENSMICG00000014898 I 0.000
RBFOX3 Loxodonta africana ENSLAFG00000016623 I 0.000
RBFOX3 Macaca mulatta ENSMMUG00000023028 I 0.000
RBFOX3 Oryctolagus cuniculus ENSOCUG00000014217 I 0.000
RBFOX3 Ochotona princeps ENSOPRG00000016279 I 0.000
RBFOX3 Callithrix jacchus ENSCJAG00000009563 I 0.000
RBFOX3 Equus caballus ENSECAG00000023811 I 0.000
Rbfox3 Mus musculus ENSMUSG00000025576 I 0.000
RBFOX3 Cavia porcellus ENSCPOG00000021703 I 0.000
RBFOX3 Gorilla gorilla ENSGGOG00000012546 I 0.000
RBFOX3 Procavia capensis ENSPCAG00000001401 I 0.000
Rbm9 Rattus norvegicus ENSRNOG00000004688 I 0.710
rbm9 Xenopus tropicalis ENSXETG00000000231 I 0.000
RBM9 Gallus gallus ENSGALG00000012540 I 0.710
RBM9 Taeniopygia guttata ENSTGUG00000010808 I 0.710
RBM9_BOVIN Bos taurus ENSBTAG00000020125 I 0.710
Sjc_0036900 Schistosoma japonicum Sjc_0036900 I 0.000
Smp_138880 Schistosoma mansoni Smp_138880 I 0.000