CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSDARG00000007049
(
Danio rerio
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSDARG00000007049
T18609_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDARP00000020172
KH
53
115
TEDFKVPDKMVGFIIGRGGEQITRIQLESNCKIQIAADSGGMMDRPCTLTGTPESIEQAKRLL
ENSDARP00000020172
KH
138
202
VQEILIPASKVGLVIGKGGDTIKQLQERTGVKMIMIQDDPMPTGSDKPLRISGDPYKVQQARELV
ENSDARP00000020172
KH
228
290
SIDVAVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPDRVAQVMGQPERCQHAVHLI
ENSDARP00000020172
KH
329
394
EVTYTIPADKCGLVIGKGGETIKNINQQSGAHVELQRNPPPNTDPNVRIFSIRGSPQQMEMARQLI
Links
Other
KH
family RBPs
Other
Danio rerio
RBPs
77 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh2_pg.C_20480
Agaricus bisporus
estExt_fgenesh2_pg.C_20480
N
0.000
EuGene2000855
Heterobasidion annosum
EuGene2000855
N
0.000
gwh1.2.40.1
Laccaria bicolor
gwh1.2.40.1
N
0.000
estExt_Genewise1Plus.C_11031
Pleurotus ostreatus
estExt_Genewise1Plus.C_11031
N
0.000
estExt_Genewise1.C_220013
Postia placenta
estExt_Genewise1.C_220013
N
0.000
estExt_Genewise1Plus.C_21122
Schizophyllum commune
estExt_Genewise1Plus.C_21122
N
0.000
estExt_fgenesh2_pg.C_200047
Serpula lacrymans
estExt_fgenesh2_pg.C_200047
N
0.000