FUBP1 (Oryctolagus cuniculus)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSOCUG00000002225 T19177_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
KHSRP
M342_0.6 		Homo sapiens Sequence logo not available CnsCyUCC RIP-chip
Cook et al.(2011)
906_17437629.3 		0.710
KHSRP
M341_0.6 		Homo sapiens Sequence logo not available nUGUrUrU RIP-chip
Cook et al.(2011)
906_17437629.2 		0.710
KHSRP
M340_0.6 		Homo sapiens Sequence logo not available UwUAUUUw RIP-chip
Cook et al.(2011)
906_17437629.1 		0.710
KHSRP
M339_0.6 		Homo sapiens Sequence logo not available UAUUUAUw RIP-chip
Cook et al.(2011)
906_17437629 		0.710
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOCUP00000001918 KH 93 155
ENSOCUP00000001918 KH 178 242
ENSOCUP00000001918 KH 268 330
ENSOCUP00000001918 KH 369 434
ENSOCUP00000019088 KH 37 101
ENSOCUP00000019088 KH 127 189
ENSOCUP00000019088 KH 228 293
ENSOCUP00000024165 KH 93 155
ENSOCUP00000024165 KH 178 242
ENSOCUP00000024165 KH 268 330
ENSOCUP00000024165 KH 369 434

Links

Other KH family RBPs
Other Oryctolagus cuniculus RBPs

103 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
FUBP1 Cavia porcellus ENSCPOG00000002757 I 1.000
FUBP1 Felis catus ENSFCAG00000010330 N 1.000
FUBP1 Erinaceus europaeus ENSEEUG00000001287 N 1.000
FUBP1 Callithrix jacchus ENSCJAG00000007062 I 1.000
Q08DJ3_BOVIN Bos taurus ENSBTAG00000008926 I 0.927
ENSSSCG00000003767 Sus scrofa ENSSSCG00000003767 I 0.927
ENSSSCG00000003771 Sus scrofa ENSSSCG00000003771 I 0.927
FUBP1 Tursiops truncatus ENSTTRG00000000096 I 0.927
FUBP1 Canis familiaris ENSCAFG00000020361 I 0.927
FUBP1 Vicugna pacos ENSVPAG00000004709 I 0.927
FUBP1 Loxodonta africana ENSLAFG00000003273 I 0.927
Fubp1 Dipodomys ordii ENSDORG00000016534 I 0.927
FUBP1 Equus caballus ENSECAG00000010867 I 0.927
FUBP1 Spermophilus tridecemlineatus ENSSTOG00000014312 I 0.927
FUBP1 Myotis lucifugus ENSMLUG00000014802 I 0.927
FUBP1 Ornithorhynchus anatinus ENSOANG00000009777 I 0.927
FUBP1 Procavia capensis ENSPCAG00000012617 I 0.927
FUBP1 Otolemur garnettii ENSOGAG00000014233 I 0.927
Ame_R010564 Ailuropoda melanoleuca Ame_R010564 I 0.923
Q5ZHW0_CHICK Gallus gallus ENSGALG00000008939 I 0.923
FUBP1 Gorilla gorilla ENSGGOG00000027554 I 0.923
Fubp1 Mus musculus ENSMUSG00000028034 I 0.923
FUBP1 Anolis carolinensis ENSACAG00000006310 I 0.923
ENSPPYG00000001219 Pongo pygmaeus ENSPPYG00000001219 I 0.923
FUBP1 Pan troglodytes ENSPTRG00000000888 I 0.923
FUBP1 Homo sapiens ENSG00000162613 I 0.923
FUBP1 Macaca mulatta ENSMMUG00000002899 I 0.923
FUBP1 Choloepus hoffmanni ENSCHOG00000008177 I 0.923
FUBP1 Meleagris gallopavo ENSMGAG00000009424 I 0.923
FUBP1 Tarsius syrichta ENSTSYG00000000148 I 0.919
FUBP1 Taeniopygia guttata ENSTGUG00000006841 I 0.902
fubp1 Xenopus tropicalis ENSXETG00000013137 I 0.884
AAI69815 Xenopus laevis AAI69815 I 0.869
AAH70981 Xenopus laevis AAH70981 I 0.869
AAH44277 Xenopus laevis AAH44277 I 0.865
AAN77161 Xenopus laevis AAN77161 I 0.842
FUBP1 Ochotona princeps ENSOPRG00000001175 N 0.819
ENSGACG00000016563 Gasterosteus aculeatus ENSGACG00000016563 I 0.816
ENSTRUG00000004615 Takifugu rubripes ENSTRUG00000004615 I 0.815
ENSORLG00000003540 Oryzias latipes ENSORLG00000003540 I 0.815
fubp1 Danio rerio ENSDARG00000029248 I 0.815
FUBP1 Microcebus murinus ENSMICG00000014463 N 0.772
FUBP3 Microcebus murinus ENSMICG00000015452 N 0.764
LOC100399862 Callithrix jacchus ENSCJAG00000020542 N 0.764
FUBP3 Cavia porcellus ENSCPOG00000010315 N 0.764
FUBP3 Pteropus vampyrus ENSPVAG00000001510 N 0.764
KHSRP Canis familiaris ENSCAFG00000018667 I 0.763
ENSPPYG00000019693 Pongo pygmaeus ENSPPYG00000019693 N 0.761
FUBP3 Homo sapiens ENSG00000107164 N 0.761
FUBP3 Gorilla gorilla ENSGGOG00000011318 N 0.761
FUBP3 Macaca mulatta ENSMMUG00000008249 N 0.761
FUBP3 Pan troglodytes ENSPTRG00000021474 N 0.761
Ame_R003042 Ailuropoda melanoleuca Ame_R003042 N 0.761
A6QP83_BOVIN Bos taurus ENSBTAG00000013072 N 0.757
Fubp3 Rattus norvegicus ENSRNOG00000009139 N 0.757
FUBP3 Ochotona princeps ENSOPRG00000008648 N 0.757
FUBP3 Loxodonta africana ENSLAFG00000011611 N 0.757
FUBP3 Canis familiaris ENSCAFG00000019942 N 0.757
FUBP1 Pteropus vampyrus ENSPVAG00000014637 N 0.753
FUBP3 Felis catus ENSFCAG00000005113 N 0.753
Fubp3 Mus musculus ENSMUSG00000026843 N 0.753
KHSRP Tarsius syrichta ENSTSYG00000011552 N 0.747
FUBP3 Monodelphis domestica ENSMODG00000012105 N 0.745
FUBP3 Dasypus novemcinctus ENSDNOG00000014533 N 0.745
FUBP3 Ornithorhynchus anatinus ENSOANG00000001042 N 0.745
FUBP3 Meleagris gallopavo ENSMGAG00000005342 N 0.741
Q5ZM76_CHICK Gallus gallus ENSGALG00000003941 N 0.741
FUBP3 Procavia capensis ENSPCAG00000001717 N 0.737
FUBP3 Taeniopygia guttata ENSTGUG00000004662 N 0.737
fubp3 Xenopus tropicalis ENSXETG00000001344 N 0.737
AAH60400 Xenopus laevis AAH60400 N 0.737
FUBP1 Tupaia belangeri ENSTBEG00000017333 N 0.732
LOC100069755 Equus caballus ENSECAG00000011500 N 0.726
FUBP3 Myotis lucifugus ENSMLUG00000008743 N 0.722
FUBP3 Oryzias latipes ENSORLG00000017565 N 0.722
FUBP3 Tetraodon nigroviridis ENSTNIG00000005858 N 0.718
ENSDARG00000007049 Danio rerio ENSDARG00000007049 N 0.714
KHSRP Anolis carolinensis ENSACAG00000015398 I 0.714
FUBP3 Takifugu rubripes ENSTRUG00000013259 N 0.714
FUBP1 Macropus eugenii ENSMEUG00000007917 N 0.711
Khsrp Mus musculus ENSMUSG00000007670 I 0.710
KHSRP Macaca mulatta ENSMMUG00000005597 I 0.710
ENSPPYG00000009454 Pongo pygmaeus ENSPPYG00000009454 I 0.710
KHSRP Pan troglodytes ENSPTRG00000010364 I 0.710
KHSRP Sus scrofa ENSSSCG00000013538 I 0.710
KHSRP Cavia porcellus ENSCPOG00000005140 I 0.710
KHSRP Loxodonta africana ENSLAFG00000002426 I 0.710
KHSRP Tursiops truncatus ENSTTRG00000010390 I 0.710
KHSRP Callithrix jacchus ENSCJAG00000016627 I 0.710
LOC505564 Bos taurus ENSBTAG00000021018 I 0.710
Ame_R016412 Ailuropoda melanoleuca Ame_R016412 I 0.710
KHSRP Felis catus ENSFCAG00000003731 I 0.710
LOC100065608 Equus caballus ENSECAG00000018305 I 0.710
KHSRP Gorilla gorilla ENSGGOG00000007028 I 0.710
KHSRP Spermophilus tridecemlineatus ENSSTOG00000002371 I 0.710
KHSRP Pteropus vampyrus ENSPVAG00000007251 I 0.710
KHSRP Homo sapiens ENSG00000088247 D 0.710
KHSRP Ochotona princeps ENSOPRG00000010594 I 0.707
Khsrp Dipodomys ordii ENSDORG00000002447 I 0.707
AAI61696 Xenopus laevis AAI61696 I 0.707
KHSRP Microcebus murinus ENSMICG00000007863 I 0.703
FUBP3 Gasterosteus aculeatus ENSGACG00000016704 N 0.703