FUBP1 (Taeniopygia guttata)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSTGUG00000006841 T19577_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
KHSRP
M341_0.6 		Homo sapiens Sequence logo not available nUGUrUrU RIP-chip
Cook et al.(2011)
906_17437629.2 		0.749
KHSRP
M340_0.6 		Homo sapiens Sequence logo not available UwUAUUUw RIP-chip
Cook et al.(2011)
906_17437629.1 		0.749
KHSRP
M339_0.6 		Homo sapiens Sequence logo not available UAUUUAUw RIP-chip
Cook et al.(2011)
906_17437629 		0.749
KHSRP
M342_0.6 		Homo sapiens Sequence logo not available CnsCyUCC RIP-chip
Cook et al.(2011)
906_17437629.3 		0.749
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTGUP00000007113 KH 61 123
ENSTGUP00000007113 KH 146 210
ENSTGUP00000007113 KH 236 298
ENSTGUP00000007113 KH 337 408

Links

Other KH family RBPs
Other Taeniopygia guttata RBPs

104 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Fubp1 Dipodomys ordii ENSDORG00000016534 I 0.973
FUBP1 Callithrix jacchus ENSCJAG00000007062 I 0.973
FUBP1 Cavia porcellus ENSCPOG00000002757 I 0.973
FUBP1 Equus caballus ENSECAG00000010867 I 0.973
FUBP1 Ornithorhynchus anatinus ENSOANG00000009777 I 0.973
Q5ZHW0_CHICK Gallus gallus ENSGALG00000008939 I 0.973
FUBP1 Canis familiaris ENSCAFG00000020361 I 0.973
FUBP1 Loxodonta africana ENSLAFG00000003273 I 0.973
FUBP1 Myotis lucifugus ENSMLUG00000014802 I 0.973
Q08DJ3_BOVIN Bos taurus ENSBTAG00000008926 I 0.973
Ame_R010564 Ailuropoda melanoleuca Ame_R010564 I 0.973
FUBP1 Otolemur garnettii ENSOGAG00000014233 I 0.973
FUBP1 Procavia capensis ENSPCAG00000012617 I 0.973
ENSSSCG00000003767 Sus scrofa ENSSSCG00000003767 I 0.973
ENSSSCG00000003771 Sus scrofa ENSSSCG00000003771 I 0.973
FUBP1 Vicugna pacos ENSVPAG00000004709 I 0.973
FUBP1 Tursiops truncatus ENSTTRG00000000096 I 0.973
FUBP1 Macaca mulatta ENSMMUG00000002899 I 0.970
FUBP1 Gorilla gorilla ENSGGOG00000027554 I 0.970
ENSPPYG00000001219 Pongo pygmaeus ENSPPYG00000001219 I 0.970
FUBP1 Choloepus hoffmanni ENSCHOG00000008177 I 0.970
FUBP1 Homo sapiens ENSG00000162613 I 0.970
FUBP1 Pan troglodytes ENSPTRG00000000888 I 0.970
Fubp1 Mus musculus ENSMUSG00000028034 I 0.970
FUBP1 Meleagris gallopavo ENSMGAG00000009424 I 0.970
FUBP1 Tarsius syrichta ENSTSYG00000000148 I 0.966
FUBP1 Anolis carolinensis ENSACAG00000006310 I 0.966
FUBP1 Spermophilus tridecemlineatus ENSSTOG00000014312 I 0.958
fubp1 Xenopus tropicalis ENSXETG00000013137 I 0.916
FUBP1 Oryctolagus cuniculus ENSOCUG00000002225 I 0.902
AAI69815 Xenopus laevis AAI69815 I 0.901
AAH70981 Xenopus laevis AAH70981 I 0.901
AAH44277 Xenopus laevis AAH44277 I 0.894
AAN77161 Xenopus laevis AAN77161 I 0.875
FUBP1 Ochotona princeps ENSOPRG00000001175 N 0.871
ENSGACG00000016563 Gasterosteus aculeatus ENSGACG00000016563 I 0.859
ENSTRUG00000004615 Takifugu rubripes ENSTRUG00000004615 I 0.848
ENSORLG00000003540 Oryzias latipes ENSORLG00000003540 I 0.848
fubp1 Danio rerio ENSDARG00000029248 I 0.833
FUBP1 Microcebus murinus ENSMICG00000014463 N 0.825
FUBP1 Pteropus vampyrus ENSPVAG00000014637 N 0.802
FUBP3 Microcebus murinus ENSMICG00000015452 N 0.780
FUBP3 Pteropus vampyrus ENSPVAG00000001510 N 0.780
LOC100399862 Callithrix jacchus ENSCJAG00000020542 N 0.780
FUBP3 Macaca mulatta ENSMMUG00000008249 N 0.777
Ame_R003042 Ailuropoda melanoleuca Ame_R003042 N 0.777
ENSPPYG00000019693 Pongo pygmaeus ENSPPYG00000019693 N 0.777
FUBP3 Gorilla gorilla ENSGGOG00000011318 N 0.777
FUBP3 Pan troglodytes ENSPTRG00000021474 N 0.777
FUBP3 Homo sapiens ENSG00000107164 N 0.777
FUBP3 Cavia porcellus ENSCPOG00000010315 N 0.777
FUBP3 Canis familiaris ENSCAFG00000019942 N 0.773
FUBP3 Loxodonta africana ENSLAFG00000011611 N 0.773
Fubp3 Rattus norvegicus ENSRNOG00000009139 N 0.773
FUBP3 Ornithorhynchus anatinus ENSOANG00000001042 N 0.773
A6QP83_BOVIN Bos taurus ENSBTAG00000013072 N 0.773
FUBP3 Ochotona princeps ENSOPRG00000008648 N 0.773
FUBP3 Felis catus ENSFCAG00000005113 N 0.769
Q5ZM76_CHICK Gallus gallus ENSGALG00000003941 N 0.769
Fubp3 Mus musculus ENSMUSG00000026843 N 0.769
FUBP3 Meleagris gallopavo ENSMGAG00000005342 N 0.769
FUBP3 Taeniopygia guttata ENSTGUG00000004662 N 0.765
AAH60400 Xenopus laevis AAH60400 N 0.765
fubp3 Xenopus tropicalis ENSXETG00000001344 N 0.765
FUBP3 Dasypus novemcinctus ENSDNOG00000014533 N 0.761
FUBP3 Monodelphis domestica ENSMODG00000012105 N 0.761
FUBP3 Procavia capensis ENSPCAG00000001717 N 0.754
FUBP3 Tetraodon nigroviridis ENSTNIG00000005858 N 0.750
Ame_R016412 Ailuropoda melanoleuca Ame_R016412 I 0.749
KHSRP Tursiops truncatus ENSTTRG00000010390 I 0.749
KHSRP Spermophilus tridecemlineatus ENSSTOG00000002371 I 0.749
KHSRP Sus scrofa ENSSSCG00000013538 I 0.749
KHSRP Pteropus vampyrus ENSPVAG00000007251 I 0.749
KHSRP Pan troglodytes ENSPTRG00000010364 I 0.749
ENSPPYG00000009454 Pongo pygmaeus ENSPPYG00000009454 I 0.749
KHSRP Anolis carolinensis ENSACAG00000015398 I 0.749
KHSRP Callithrix jacchus ENSCJAG00000016627 I 0.749
KHSRP Gorilla gorilla ENSGGOG00000007028 I 0.749
KHSRP Loxodonta africana ENSLAFG00000002426 I 0.749
KHSRP Homo sapiens ENSG00000088247 D 0.749
KHSRP Felis catus ENSFCAG00000003731 I 0.749
KHSRP Cavia porcellus ENSCPOG00000005140 I 0.749
LOC100065608 Equus caballus ENSECAG00000018305 I 0.749
LOC505564 Bos taurus ENSBTAG00000021018 I 0.749
KHSRP Canis familiaris ENSCAFG00000018667 I 0.749
Khsrp Mus musculus ENSMUSG00000007670 I 0.749
KHSRP Macaca mulatta ENSMMUG00000005597 I 0.749
FUBP3 Oryzias latipes ENSORLG00000017565 N 0.746
FUBP3 Takifugu rubripes ENSTRUG00000013259 N 0.746
Khsrp Dipodomys ordii ENSDORG00000002447 I 0.745
KHSRP Ochotona princeps ENSOPRG00000010594 I 0.745
LOC100069755 Equus caballus ENSECAG00000011500 N 0.742
KHSRP Microcebus murinus ENSMICG00000007863 I 0.741
ENSDARG00000007049 Danio rerio ENSDARG00000007049 N 0.739
FUBP3 Myotis lucifugus ENSMLUG00000008743 N 0.739
AAI61696 Xenopus laevis AAI61696 I 0.738
AAN77160 Xenopus laevis AAN77160 I 0.734
AAI69923 Xenopus laevis AAI69923 I 0.734
KHSRP Danio rerio ENSDARG00000026489 I 0.719
FUBP3 Gasterosteus aculeatus ENSGACG00000016704 N 0.716
FUBP3 Tetraodon nigroviridis ENSTNIG00000009019 N 0.708
KHSRP Gasterosteus aculeatus ENSGACG00000012422 I 0.707
KHSRP Macropus eugenii ENSMEUG00000016601 I 0.707
FUBP3 Oryzias latipes ENSORLG00000007103 N 0.705