CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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FUBP1
(
Taeniopygia guttata
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSTGUG00000006841
T19577_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
KHSRP
M342_0.6
Homo sapiens
Sequence logo not available
CnsCyUCC
RIP-chip
Cook et al.(2011)
906_17437629.3
0.749
KHSRP
M341_0.6
Homo sapiens
Sequence logo not available
nUGUrUrU
RIP-chip
Cook et al.(2011)
906_17437629.2
0.749
KHSRP
M340_0.6
Homo sapiens
Sequence logo not available
UwUAUUUw
RIP-chip
Cook et al.(2011)
906_17437629.1
0.749
KHSRP
M339_0.6
Homo sapiens
Sequence logo not available
UAUUUAUw
RIP-chip
Cook et al.(2011)
906_17437629
0.749
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTGUP00000007113
KH
61
123
TEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLL
ENSTGUP00000007113
KH
146
210
VQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMV
ENSTGUP00000007113
KH
236
298
GIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEII
ENSTGUP00000007113
KH
337
408
EFNFIVPTGKTGLIIGKGNISYLCGETIKSISQQSGARIELQRNPPPNADPNMKMFTIRGTPQQIDYARQLI
Links
Other
KH
family RBPs
Other
Taeniopygia guttata
RBPs
104 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Fubp1
Dipodomys ordii
ENSDORG00000016534
I
0.973
FUBP1
Callithrix jacchus
ENSCJAG00000007062
I
0.973
FUBP1
Cavia porcellus
ENSCPOG00000002757
I
0.973
FUBP1
Equus caballus
ENSECAG00000010867
I
0.973
FUBP1
Ornithorhynchus anatinus
ENSOANG00000009777
I
0.973
Q5ZHW0_CHICK
Gallus gallus
ENSGALG00000008939
I
0.973
FUBP1
Canis familiaris
ENSCAFG00000020361
I
0.973
FUBP1
Loxodonta africana
ENSLAFG00000003273
I
0.973
FUBP1
Myotis lucifugus
ENSMLUG00000014802
I
0.973
Q08DJ3_BOVIN
Bos taurus
ENSBTAG00000008926
I
0.973
Ame_R010564
Ailuropoda melanoleuca
Ame_R010564
I
0.973
FUBP1
Otolemur garnettii
ENSOGAG00000014233
I
0.973
FUBP1
Procavia capensis
ENSPCAG00000012617
I
0.973
ENSSSCG00000003767
Sus scrofa
ENSSSCG00000003767
I
0.973
ENSSSCG00000003771
Sus scrofa
ENSSSCG00000003771
I
0.973
FUBP1
Vicugna pacos
ENSVPAG00000004709
I
0.973
FUBP1
Tursiops truncatus
ENSTTRG00000000096
I
0.973
FUBP1
Macaca mulatta
ENSMMUG00000002899
I
0.970
FUBP1
Gorilla gorilla
ENSGGOG00000027554
I
0.970
ENSPPYG00000001219
Pongo pygmaeus
ENSPPYG00000001219
I
0.970
FUBP1
Choloepus hoffmanni
ENSCHOG00000008177
I
0.970
FUBP1
Homo sapiens
ENSG00000162613
I
0.970
FUBP1
Pan troglodytes
ENSPTRG00000000888
I
0.970
Fubp1
Mus musculus
ENSMUSG00000028034
I
0.970
FUBP1
Meleagris gallopavo
ENSMGAG00000009424
I
0.970
FUBP1
Tarsius syrichta
ENSTSYG00000000148
I
0.966
FUBP1
Anolis carolinensis
ENSACAG00000006310
I
0.966
FUBP1
Spermophilus tridecemlineatus
ENSSTOG00000014312
I
0.958
fubp1
Xenopus tropicalis
ENSXETG00000013137
I
0.916
FUBP1
Oryctolagus cuniculus
ENSOCUG00000002225
I
0.902
AAI69815
Xenopus laevis
AAI69815
I
0.901
AAH70981
Xenopus laevis
AAH70981
I
0.901
AAH44277
Xenopus laevis
AAH44277
I
0.894
AAN77161
Xenopus laevis
AAN77161
I
0.875
FUBP1
Ochotona princeps
ENSOPRG00000001175
N
0.871
ENSGACG00000016563
Gasterosteus aculeatus
ENSGACG00000016563
I
0.859
ENSTRUG00000004615
Takifugu rubripes
ENSTRUG00000004615
I
0.848
ENSORLG00000003540
Oryzias latipes
ENSORLG00000003540
I
0.848
fubp1
Danio rerio
ENSDARG00000029248
I
0.833
FUBP1
Microcebus murinus
ENSMICG00000014463
N
0.825
FUBP1
Pteropus vampyrus
ENSPVAG00000014637
N
0.802
FUBP3
Microcebus murinus
ENSMICG00000015452
N
0.780
FUBP3
Pteropus vampyrus
ENSPVAG00000001510
N
0.780
LOC100399862
Callithrix jacchus
ENSCJAG00000020542
N
0.780
FUBP3
Macaca mulatta
ENSMMUG00000008249
N
0.777
Ame_R003042
Ailuropoda melanoleuca
Ame_R003042
N
0.777
ENSPPYG00000019693
Pongo pygmaeus
ENSPPYG00000019693
N
0.777
FUBP3
Gorilla gorilla
ENSGGOG00000011318
N
0.777
FUBP3
Pan troglodytes
ENSPTRG00000021474
N
0.777
FUBP3
Homo sapiens
ENSG00000107164
N
0.777
FUBP3
Cavia porcellus
ENSCPOG00000010315
N
0.777
FUBP3
Canis familiaris
ENSCAFG00000019942
N
0.773
FUBP3
Loxodonta africana
ENSLAFG00000011611
N
0.773
Fubp3
Rattus norvegicus
ENSRNOG00000009139
N
0.773
FUBP3
Ornithorhynchus anatinus
ENSOANG00000001042
N
0.773
A6QP83_BOVIN
Bos taurus
ENSBTAG00000013072
N
0.773
FUBP3
Ochotona princeps
ENSOPRG00000008648
N
0.773
FUBP3
Felis catus
ENSFCAG00000005113
N
0.769
Q5ZM76_CHICK
Gallus gallus
ENSGALG00000003941
N
0.769
Fubp3
Mus musculus
ENSMUSG00000026843
N
0.769
FUBP3
Meleagris gallopavo
ENSMGAG00000005342
N
0.769
FUBP3
Taeniopygia guttata
ENSTGUG00000004662
N
0.765
AAH60400
Xenopus laevis
AAH60400
N
0.765
fubp3
Xenopus tropicalis
ENSXETG00000001344
N
0.765
FUBP3
Dasypus novemcinctus
ENSDNOG00000014533
N
0.761
FUBP3
Monodelphis domestica
ENSMODG00000012105
N
0.761
FUBP3
Procavia capensis
ENSPCAG00000001717
N
0.754
FUBP3
Tetraodon nigroviridis
ENSTNIG00000005858
N
0.750
Ame_R016412
Ailuropoda melanoleuca
Ame_R016412
I
0.749
KHSRP
Tursiops truncatus
ENSTTRG00000010390
I
0.749
KHSRP
Spermophilus tridecemlineatus
ENSSTOG00000002371
I
0.749
KHSRP
Sus scrofa
ENSSSCG00000013538
I
0.749
KHSRP
Pteropus vampyrus
ENSPVAG00000007251
I
0.749
KHSRP
Pan troglodytes
ENSPTRG00000010364
I
0.749
ENSPPYG00000009454
Pongo pygmaeus
ENSPPYG00000009454
I
0.749
KHSRP
Anolis carolinensis
ENSACAG00000015398
I
0.749
KHSRP
Callithrix jacchus
ENSCJAG00000016627
I
0.749
KHSRP
Gorilla gorilla
ENSGGOG00000007028
I
0.749
KHSRP
Loxodonta africana
ENSLAFG00000002426
I
0.749
KHSRP
Homo sapiens
ENSG00000088247
D
0.749
KHSRP
Felis catus
ENSFCAG00000003731
I
0.749
KHSRP
Cavia porcellus
ENSCPOG00000005140
I
0.749
LOC100065608
Equus caballus
ENSECAG00000018305
I
0.749
LOC505564
Bos taurus
ENSBTAG00000021018
I
0.749
KHSRP
Canis familiaris
ENSCAFG00000018667
I
0.749
Khsrp
Mus musculus
ENSMUSG00000007670
I
0.749
KHSRP
Macaca mulatta
ENSMMUG00000005597
I
0.749
FUBP3
Oryzias latipes
ENSORLG00000017565
N
0.746
FUBP3
Takifugu rubripes
ENSTRUG00000013259
N
0.746
Khsrp
Dipodomys ordii
ENSDORG00000002447
I
0.745
KHSRP
Ochotona princeps
ENSOPRG00000010594
I
0.745
LOC100069755
Equus caballus
ENSECAG00000011500
N
0.742
KHSRP
Microcebus murinus
ENSMICG00000007863
I
0.741
ENSDARG00000007049
Danio rerio
ENSDARG00000007049
N
0.739
FUBP3
Myotis lucifugus
ENSMLUG00000008743
N
0.739
AAI61696
Xenopus laevis
AAI61696
I
0.738
AAN77160
Xenopus laevis
AAN77160
I
0.734
AAI69923
Xenopus laevis
AAI69923
I
0.734
KHSRP
Danio rerio
ENSDARG00000026489
I
0.719
FUBP3
Gasterosteus aculeatus
ENSGACG00000016704
N
0.716
FUBP3
Tetraodon nigroviridis
ENSTNIG00000009019
N
0.708
KHSRP
Gasterosteus aculeatus
ENSGACG00000012422
I
0.707
KHSRP
Macropus eugenii
ENSMEUG00000016601
I
0.707
FUBP3
Oryzias latipes
ENSORLG00000007103
N
0.705