CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSORLG00000003540
(
Oryzias latipes
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSORLG00000003540
T19277_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
KHSRP
M339_0.6
Homo sapiens
Sequence logo not available
UAUUUAUw
RIP-chip
Cook et al.(2011)
906_17437629
0.716
KHSRP
M342_0.6
Homo sapiens
Sequence logo not available
CnsCyUCC
RIP-chip
Cook et al.(2011)
906_17437629.3
0.716
KHSRP
M341_0.6
Homo sapiens
Sequence logo not available
nUGUrUrU
RIP-chip
Cook et al.(2011)
906_17437629.2
0.716
KHSRP
M340_0.6
Homo sapiens
Sequence logo not available
UwUAUUUw
RIP-chip
Cook et al.(2011)
906_17437629.1
0.716
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSORLP00000004413
KH
89
151
SEEFKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGMPERSVTLTGPQDSIQAAKRLL
ENSORLP00000004413
KH
174
238
VQEIMVPASKAGLVIGKGGETIKSLQERAGVKMVMIQDGPQNTGADKPLRISGEPFKVQQAKEMV
ENSORLP00000004413
KH
262
324
SLDVPVPRFAVGIVIGRNGEMIKKIQNDTGVRIQFKPDDGSAPDRIAQIMGPPDQAQHAADII
ENSORLP00000004413
KH
362
427
EFTFTVPTMKTGLIIGKGGETIKGISQQSGARIELQRNPPPNSDPNIKMFTVRGSPQQIDYARQLV
ENSORLP00000004416
KH
89
151
SEEFKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGMPERSVTLTGPQDSIQAAKRLL
ENSORLP00000004416
KH
174
238
VQEIMVPASKAGLVIGKGGETIKSLQERAGVKMVMIQDGPQNTGADKPLRISGEPFKVQQAKEMV
ENSORLP00000004416
KH
262
324
SLDVPVPRFAVGIVIGRNGEMIKKIQNDTGVRIQFKPDDGSAPDRIAQIMGPPDQAQHAADII
ENSORLP00000004416
KH
362
427
EFTFTVPTMKTGLIIGKGGETIKGISQQSGARIELQRNPPPNSDPNIKMFTVRGSPQQIDYARQLV
Links
Other
KH
family RBPs
Other
Oryzias latipes
RBPs
103 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSTRUG00000004615
Takifugu rubripes
ENSTRUG00000004615
I
0.957
ENSGACG00000016563
Gasterosteus aculeatus
ENSGACG00000016563
I
0.946
fubp1
Danio rerio
ENSDARG00000029248
I
0.926
fubp1
Xenopus tropicalis
ENSXETG00000013137
I
0.875
FUBP1
Anolis carolinensis
ENSACAG00000006310
I
0.872
FUBP1
Callithrix jacchus
ENSCJAG00000007062
I
0.864
FUBP1
Cavia porcellus
ENSCPOG00000002757
I
0.864
ENSSSCG00000003771
Sus scrofa
ENSSSCG00000003771
I
0.864
FUBP1
Canis familiaris
ENSCAFG00000020361
I
0.864
FUBP1
Vicugna pacos
ENSVPAG00000004709
I
0.864
FUBP1
Tursiops truncatus
ENSTTRG00000000096
I
0.864
FUBP1
Tarsius syrichta
ENSTSYG00000000148
I
0.864
Q08DJ3_BOVIN
Bos taurus
ENSBTAG00000008926
I
0.864
ENSSSCG00000003767
Sus scrofa
ENSSSCG00000003767
I
0.864
Fubp1
Dipodomys ordii
ENSDORG00000016534
I
0.864
FUBP1
Procavia capensis
ENSPCAG00000012617
I
0.864
FUBP1
Ornithorhynchus anatinus
ENSOANG00000009777
I
0.864
FUBP1
Otolemur garnettii
ENSOGAG00000014233
I
0.864
FUBP1
Equus caballus
ENSECAG00000010867
I
0.864
FUBP1
Myotis lucifugus
ENSMLUG00000014802
I
0.864
FUBP1
Loxodonta africana
ENSLAFG00000003273
I
0.864
Q5ZHW0_CHICK
Gallus gallus
ENSGALG00000008939
I
0.861
Ame_R010564
Ailuropoda melanoleuca
Ame_R010564
I
0.860
FUBP1
Homo sapiens
ENSG00000162613
I
0.860
Fubp1
Mus musculus
ENSMUSG00000028034
I
0.860
AAH44277
Xenopus laevis
AAH44277
I
0.860
FUBP1
Macaca mulatta
ENSMMUG00000002899
I
0.860
FUBP1
Gorilla gorilla
ENSGGOG00000027554
I
0.860
FUBP1
Meleagris gallopavo
ENSMGAG00000009424
I
0.860
FUBP1
Choloepus hoffmanni
ENSCHOG00000008177
I
0.860
FUBP1
Pan troglodytes
ENSPTRG00000000888
I
0.860
ENSPPYG00000001219
Pongo pygmaeus
ENSPPYG00000001219
I
0.860
FUBP1
Spermophilus tridecemlineatus
ENSSTOG00000014312
I
0.860
AAI69815
Xenopus laevis
AAI69815
I
0.856
AAH70981
Xenopus laevis
AAH70981
I
0.856
FUBP1
Taeniopygia guttata
ENSTGUG00000006841
I
0.848
AAN77161
Xenopus laevis
AAN77161
I
0.837
FUBP1
Oryctolagus cuniculus
ENSOCUG00000002225
I
0.815
FUBP1
Ochotona princeps
ENSOPRG00000001175
N
0.775
FUBP3
Ornithorhynchus anatinus
ENSOANG00000001042
N
0.771
LOC100399862
Callithrix jacchus
ENSCJAG00000020542
N
0.771
FUBP3
Macaca mulatta
ENSMMUG00000008249
N
0.767
ENSPPYG00000019693
Pongo pygmaeus
ENSPPYG00000019693
N
0.767
FUBP3
Homo sapiens
ENSG00000107164
N
0.767
FUBP3
Pan troglodytes
ENSPTRG00000021474
N
0.767
FUBP3
Gorilla gorilla
ENSGGOG00000011318
N
0.767
FUBP3
Pteropus vampyrus
ENSPVAG00000001510
N
0.767
FUBP3
Microcebus murinus
ENSMICG00000015452
N
0.767
FUBP3
Cavia porcellus
ENSCPOG00000010315
N
0.764
Ame_R003042
Ailuropoda melanoleuca
Ame_R003042
N
0.764
Q5ZM76_CHICK
Gallus gallus
ENSGALG00000003941
N
0.760
FUBP3
Ochotona princeps
ENSOPRG00000008648
N
0.760
FUBP3
Meleagris gallopavo
ENSMGAG00000005342
N
0.760
A6QP83_BOVIN
Bos taurus
ENSBTAG00000013072
N
0.760
Fubp3
Rattus norvegicus
ENSRNOG00000009139
N
0.760
FUBP3
Canis familiaris
ENSCAFG00000019942
N
0.760
FUBP3
Loxodonta africana
ENSLAFG00000011611
N
0.760
FUBP3
Felis catus
ENSFCAG00000005113
N
0.756
fubp3
Xenopus tropicalis
ENSXETG00000001344
N
0.756
Fubp3
Mus musculus
ENSMUSG00000026843
N
0.756
FUBP3
Taeniopygia guttata
ENSTGUG00000004662
N
0.756
FUBP3
Dasypus novemcinctus
ENSDNOG00000014533
N
0.748
FUBP3
Monodelphis domestica
ENSMODG00000012105
N
0.748
AAH60400
Xenopus laevis
AAH60400
N
0.748
FUBP3
Procavia capensis
ENSPCAG00000001717
N
0.740
ENSDARG00000007049
Danio rerio
ENSDARG00000007049
N
0.740
LOC100069755
Equus caballus
ENSECAG00000011500
N
0.736
FUBP1
Microcebus murinus
ENSMICG00000014463
N
0.735
FUBP3
Tetraodon nigroviridis
ENSTNIG00000005858
N
0.733
AAI61696
Xenopus laevis
AAI61696
I
0.732
FUBP3
Oryzias latipes
ENSORLG00000017565
N
0.729
AAI69923
Xenopus laevis
AAI69923
I
0.728
AAN77160
Xenopus laevis
AAN77160
I
0.728
FUBP3
Takifugu rubripes
ENSTRUG00000013259
N
0.721
FUBP3
Myotis lucifugus
ENSMLUG00000008743
N
0.717
Khsrp
Mus musculus
ENSMUSG00000007670
I
0.716
KHSRP
Macaca mulatta
ENSMMUG00000005597
I
0.716
ENSPPYG00000009454
Pongo pygmaeus
ENSPPYG00000009454
I
0.716
KHSRP
Microcebus murinus
ENSMICG00000007863
I
0.716
KHSRP
Felis catus
ENSFCAG00000003731
I
0.716
KHSRP
Callithrix jacchus
ENSCJAG00000016627
I
0.716
KHSRP
Spermophilus tridecemlineatus
ENSSTOG00000002371
I
0.716
KHSRP
Cavia porcellus
ENSCPOG00000005140
I
0.716
KHSRP
Canis familiaris
ENSCAFG00000018667
I
0.716
LOC505564
Bos taurus
ENSBTAG00000021018
I
0.716
KHSRP
Tursiops truncatus
ENSTTRG00000010390
I
0.716
Ame_R016412
Ailuropoda melanoleuca
Ame_R016412
I
0.716
KHSRP
Anolis carolinensis
ENSACAG00000015398
I
0.716
KHSRP
Loxodonta africana
ENSLAFG00000002426
I
0.716
KHSRP
Sus scrofa
ENSSSCG00000013538
I
0.716
KHSRP
Pteropus vampyrus
ENSPVAG00000007251
I
0.716
KHSRP
Homo sapiens
ENSG00000088247
D
0.716
LOC100065608
Equus caballus
ENSECAG00000018305
I
0.716
KHSRP
Pan troglodytes
ENSPTRG00000010364
I
0.716
KHSRP
Gorilla gorilla
ENSGGOG00000007028
I
0.716
Khsrp
Dipodomys ordii
ENSDORG00000002447
I
0.712
KHSRP
Ochotona princeps
ENSOPRG00000010594
I
0.712
FUBP3
Gasterosteus aculeatus
ENSGACG00000016704
N
0.709
FUBP3
Tetraodon nigroviridis
ENSTNIG00000009019
N
0.709
FUBP1
Pteropus vampyrus
ENSPVAG00000014637
N
0.708
FUBP3
Oryzias latipes
ENSORLG00000007103
N
0.705
KHSRP
Gasterosteus aculeatus
ENSGACG00000012422
I
0.700