CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PK22244.1
(
Cannabis sativa
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PK22244.1
T31746_0.6
Cannabis sativa genome (2012-Feb-20)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PK22244.1
RRM
11
81
VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLR
Links
Other
RRM
family RBPs
Other
Cannabis sativa
RBPs
131 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AB03863.1
Alternaria brassicicola
AB03863.1
N
0.000
An08g00930
Aspergillus niger
CADANGAG00006412
N
0.000
CpipJ_CPIJ002557
Culex pipiens
CpipJ_CPIJ002557
N
0.000
CPIJ002557
Culex quinquefasciatus
CPIJ002557
N
0.000
GA18942-RA
Drosophila pseudoobscura
FBgn0078941
N
0.000
FVEG_02700
Fusarium verticillioides
FVEG_02700
N
0.000
LjT04A22.90.nc
Lotus japonicus
LjT04A22.90.nc
N
0.000
nasonia_NCBI_hmm378444
Nasonia vitripennis
nasonia_NCBI_hmm378444
N
0.000
NCU01017
Neurospora crassa
NCU01017
N
0.000
EAT87800.2
Phaeosphaeria nodorum
EAT87800.2
N
0.000
PTRG_04194
Pyrenophora tritici repentis
PTRG_04194
N
0.000
SNOG_05409
Stagonospora nodorum
SNOG_05409
N
0.000
GSTUMT00003933001
Tuber melanosporum
GSTUMT00003933001
N
0.000