CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AAEL014033
(
Aedes aegypti
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
AAEL014033
T32431_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
bru-3
M117_0.6
Drosophila melanogaster
KUGKUGU
RNAcompete
Ray et al.(2013)
RNCMPT00122
0.921
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAEL014033-PA
RRM
3
71
LFVGMLSKQQTEEDVRQLFNAFGTIEECTILRGPDGASKGCAFVKFTSHQEAQAAITTLHGSQTMPGAS
AAEL014033-PA
RRM
268
338
LFIYHLPQEFGDGELMQMFMPFGTVISSKVFIDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK
Links
Other
RRM
family RBPs
Other
Aedes aegypti
RBPs
62 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CELF5
Anolis carolinensis
ENSACAG00000016959
I
0.843
AGAP004950
Anopheles gambiae
AGAP004950
I
0.993
amel4_ncbi_hmm7761
Apis mellifera
amel4_ncbi_hmm7761
I
0.921
BGIBMGA010431
Bombyx mori
BGIBMGA010431
I
0.714
Q2KI16_BOVIN
Bos taurus
ENSBTAG00000008937
I
0.721
estExt_fgenesh2_pm.C_730008
Branchiostoma floridae
estExt_fgenesh2_pm.C_730008
I
0.714
CJA07020
Caenorhabditis japonica
CJA07020
I
0.750
LOC100391960
Callithrix jacchus
ENSCJAG00000020663
I
0.721
CELF5
Callithrix jacchus
ENSCJAG00000014799
I
0.850
LOC100414308
Callithrix jacchus
ENSCJAG00000018355
I
0.807
CELF5
Cavia porcellus
ENSCPOG00000005740
I
0.850
CpipJ_CPIJ016329
Culex pipiens
CpipJ_CPIJ016329
I
0.707
CPIJ016329
Culex quinquefasciatus
CPIJ016329
I
0.707
GF10965
Drosophila ananassae
FBgn0088005
I
0.921
GG13757
Drosophila erecta
FBgn0106020
I
0.921
GH14684
Drosophila grimshawi
FBgn0122160
I
0.914
bru-3
Drosophila melanogaster
FBgn0262350
D
0.921
FBgn0262475
Drosophila melanogaster
FBgn0262475
I
0.700
GI13095
Drosophila mojavensis
FBgn0135852
I
0.914
GL21647
Drosophila persimilis
FBgn0159240
I
0.871
GA28624-RA
Drosophila pseudoobscura
FBgn0249984
I
0.893
GM24582
Drosophila sechellia
FBgn0179445
I
0.921
GD12651
Drosophila simulans
FBgn0184378
I
0.921
GJ13842
Drosophila virilis
FBgn0201061
I
0.914
GK17101
Drosophila willistoni
FBgn0219100
I
0.921
GE20053
Drosophila yakuba
FBgn0237378
I
0.921
ENSFCAG00000007908
Felis catus
ENSFCAG00000007908
N
0.714
A5A2G4_CHICK
Gallus gallus
ENSGALG00000001966
I
0.864
A5A2G2_CHICK
Gallus gallus
ENSGALG00000002413
I
0.886
CELF6
Gasterosteus aculeatus
ENSGACG00000016626
I
0.864
CELF5
Gasterosteus aculeatus
ENSGACG00000012870
I
0.864
ENSGGOG00000023049
Gorilla gorilla
ENSGGOG00000023049
I
0.821
CELF2
Gorilla gorilla
ENSGGOG00000009330
I
0.721
CELF5
Gorilla gorilla
ENSGGOG00000002078
I
0.844
90208
Helobdella robusta
90208
I
0.780
62054
Helobdella robusta
62054
I
0.786
BRUNOL6
Homo sapiens
ENSG00000140488
D
0.807
LOAG_05508
Loa loa
LOAG_05508
I
0.814
estExt_fgenesh2_pg.C_sca_1310025
Lottia gigantea
estExt_fgenesh2_pg.C_sca_1310025
I
0.757
CELF4
Loxodonta africana
ENSLAFG00000021352
I
0.879
HEXA
Macaca mulatta
ENSMMUG00000010687
I
0.807
CELF6
Monodelphis domestica
ENSMODG00000001784
I
0.864
CELF5
Monodelphis domestica
ENSMODG00000019151
I
0.850
Celf6
Mus musculus
ENSMUSG00000032297
I
0.814
nasonia_NCBI_hmm496514
Nasonia vitripennis
nasonia_NCBI_hmm496514
I
0.886
CELF5
Ochotona princeps
ENSOPRG00000007881
I
0.814
CELF6
Ochotona princeps
ENSOPRG00000019169
I
0.814
CELF2
Ornithorhynchus anatinus
ENSOANG00000015432
I
0.721
CELF6
Ornithorhynchus anatinus
ENSOANG00000011308
I
0.871
CELF6
Oryzias latipes
ENSORLG00000013392
I
0.864
CELF6
Pan troglodytes
ENSPTRG00000034360
I
0.807
PHUM315130
Pediculus humanus
PHUM315130
I
0.921
Brunol4
Rattus norvegicus
ENSRNOG00000014503
I
0.871
Sjc_0024790
Schistosoma japonicum
Sjc_0024790
I
0.764
Smp_041280
Schistosoma mansoni
Smp_041280
I
0.850
Smp_131780
Schistosoma mansoni
Smp_131780
I
0.771
BRUNOL4
Taeniopygia guttata
ENSTGUG00000001649
I
0.886
CELF5
Takifugu rubripes
ENSTRUG00000017937
I
0.871
CELF6
Takifugu rubripes
ENSTRUG00000012391
I
0.864
CELF3
Takifugu rubripes
ENSTRUG00000012064
I
0.793
CELF5
Tetraodon nigroviridis
ENSTNIG00000010634
I
0.871
CELF3
Tupaia belangeri
ENSTBEG00000010130
I
0.743