XM_002894411.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Al_scaffold_0001_4812 T32584_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Al_scaffold_0001_4812 RRM 78 145
Al_scaffold_0001_4812 RRM 175 243

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

70 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002882834.1 Arabidopsis lyrata fgenesh2_kg.3__1570__AT3G14450.1 N 0.818
XM_002872481.1 Arabidopsis lyrata fgenesh2_kg.6__3042__AT4G10610.1 N 0.759
XM_002877626.1 Arabidopsis lyrata fgenesh2_kg.5__1290__AT3G49390.2 N 0.715
XM_002893696.1 Arabidopsis lyrata fgenesh2_kg.1__3419__AT1G32790.2 N 0.774
ATRBP37 Arabidopsis thaliana AT4G10610-TAIR-G N 0.745
CID10 Arabidopsis thaliana AT3G49390-TAIR-G N 0.715
CID9 Arabidopsis thaliana AT3G14450-TAIR-G N 0.818
CID8 Arabidopsis thaliana AT1G53650-TAIR-G N 0.971
CID11 Arabidopsis thaliana AT1G32790-TAIR-G N 0.774
BRADI3G13740 Brachypodium distachyon BRADI3G13740 N 0.737
BRADI3G09250 Brachypodium distachyon BRADI3G09250 N 0.759
BRADI2G06650 Brachypodium distachyon BRADI2G06650 N 0.730
BRADI1G39150 Brachypodium distachyon BRADI1G39150 N 0.759
PK12463.1 Cannabis sativa PK12463.1 N 0.781
PK28889.1 Cannabis sativa PK28889.1 N 0.781
PK04894.1 Cannabis sativa PK04894.1 N 0.788
Cucsa.273320 Cucumis sativus Cucsa.273320 N 0.752
Glyma06g14050.1 Glycine max Glyma06g14050.1 N 0.774
Glyma04g40760.1 Glycine max Glyma04g40760.1 N 0.766
Glyma04g40750.1 Glycine max Glyma04g40750.1 N 0.774
Glyma08g18810.1 Glycine max Glyma08g18810.1 N 0.796
Glyma15g40060.1 Glycine max Glyma15g40060.1 N 0.781
Glyma06g14030.1 Glycine max Glyma06g14030.1 N 0.752
chr3.CM0059.50.nd Lotus japonicus chr3.CM0059.50.nd N 0.730
MDP0000233630 Malus x domestica MDP0000233630 N 0.766
cassava37978.valid.m1 Manihot esculenta cassava37978.valid.m1 N 0.752
cassava43127.valid.m1 Manihot esculenta cassava43127.valid.m1 N 0.781
cassava38063.valid.m1 Manihot esculenta cassava38063.valid.m1 N 0.752
cassava38064.valid.m1 Manihot esculenta cassava38064.valid.m1 N 0.752
cassava38065.valid.m1 Manihot esculenta cassava38065.valid.m1 N 0.752
cassava41363.m1 Manihot esculenta cassava41363.m1 N 0.752
cassava41364.m1 Manihot esculenta cassava41364.m1 N 0.752
cassava23841.valid.m1 Manihot esculenta cassava23841.valid.m1 N 0.825
cassava37979.valid.m1 Manihot esculenta cassava37979.valid.m1 N 0.752
Medtr3g122920 Medicago truncatula Medtr3g122920 N 0.745
Medtr3g122880 Medicago truncatula Medtr3g122880 N 0.774
mgf013366m Mimulus guttatus mgf013366m N 0.774
mgf005336m Mimulus guttatus mgf005336m N 0.708
mgf014445m Mimulus guttatus mgf014445m N 0.701
mgf012896m Mimulus guttatus mgf012896m N 0.781
BGIOSIBCE022210 Oryza indica BGIOSIBCE022210 N 0.737
BGIOSIBCE026288 Oryza indica BGIOSIBCE026288 N 0.752
BGIOSIBCE006292 Oryza indica BGIOSIBCE006292 N 0.766
LOC_Os01g11120 Oryza sativa LOC_Os01g11120 N 0.715
LOC_Os08g02330 Oryza sativa LOC_Os08g02330 N 0.752
LOC_Os06g35030 Oryza sativa LOC_Os06g35030 N 0.752
LOC_Os02g14760 Oryza sativa LOC_Os02g14760 N 0.766
PDK_20s1822231g001 Phoenix dactylifera PDK_20s1822231g001 N 0.701
estExt_Genewise1.C_1960042 Physcomitrella patens estExt_Genewise1.C_1960042 N 0.788
e_gw1.62.48.1 Physcomitrella patens e_gw1.62.48.1 N 0.788
ppa009298m Prunus persica ppa009298m N 0.810
ppa006808m Prunus persica ppa006808m N 0.788
29650.m000268 Ricinus communis 29650.m000268 N 0.796
29485.m000140 Ricinus communis 29485.m000140 N 0.752
30068.m002593 Ricinus communis 30068.m002593 N 0.781
gw1.29.636.1 Selaginella moellendorfii gw1.29.636.1 N 0.759
gw1.10.957.1 Selaginella moellendorfii gw1.10.957.1 N 0.759
SB03G002180 Sorghum bicolor Sb03g002180 N 0.701
SB10G021290 Sorghum bicolor Sb10g021290 N 0.737
Sb04g008740 Sorghum bicolor Sb04g008740 N 0.774
SB07G001560 Sorghum bicolor Sb07g001560 N 0.759
GSVIVG00001961001 Vitis vinifera GSVIVG00001961001 N 0.803
GSVIVG00019674001 Vitis vinifera GSVIVG00019674001 N 0.796
GSVIVG00038633001 Vitis vinifera GSVIVG00038633001 N 0.803
GRMZM2G349794 Zea mays GRMZM2G349794 N 0.701
GRMZM2G118590 Zea mays GRMZM2G118590 N 0.723
GRMZM2G069102 Zea mays GRMZM2G069102 N 0.759
GRMZM2G051043 Zea mays GRMZM2G051043 N 0.701
GRMZM2G029058 Zea mays GRMZM2G029058 N 0.752
GRMZM2G173428 Zea mays GRMZM2G173428 N 0.759