TAF1 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000013390 T35595_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NONO
M309_0.6 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
490_12403470 		1.000
NONO
M307_0.6 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
488_9001221 		1.000
SFPQ
M308_0.6 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
489_12403470 		0.759
SFPQ
M168_0.6 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.759
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000024753 RRM 76 140
ENSCJAP00000024753 RRM 150 216
ENSCJAP00000024761 RRM 76 140
ENSCJAP00000024761 RRM 150 216
ENSCJAP00000043799 RRM 76 140
ENSCJAP00000043799 RRM 150 216
ENSCJAP00000045393 RRM 1 51
ENSCJAP00000045393 RRM 61 127

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

84 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R017809 Ailuropoda melanoleuca Ame_R017809 I 1.000
Ame_R005060 Ailuropoda melanoleuca Ame_R005060 I 0.759
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.705
ENSACAG00000013307 Anolis carolinensis ENSACAG00000013307 I 0.742
NONO Anolis carolinensis ENSACAG00000015026 I 0.917
Q2KJ42_BOVIN Bos taurus ENSBTAG00000012152 I 1.000
SFPQ Bos taurus ENSBTAG00000016328 I 0.759
LOC100386194 Callithrix jacchus ENSCJAG00000001431 I 0.759
ENSCJAG00000003136 Callithrix jacchus ENSCJAG00000003136 I 0.970
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.759
XM_532566.2 Canis familiaris ENSCAFG00000018271 I 0.737
ENSCAFG00000013766 Canis familiaris ENSCAFG00000013766 I 0.879
ENSCAFG00000017071 Canis familiaris ENSCAFG00000017071 I 1.000
ENSCPOG00000010263 Cavia porcellus ENSCPOG00000010263 I 1.000
SFPQ Cavia porcellus ENSCPOG00000015018 I 0.759
ENSCPOG00000026604 Cavia porcellus ENSCPOG00000026604 I 0.803
ENSCPOG00000023605 Cavia porcellus ENSCPOG00000023605 I 0.992
sfpq Danio rerio ENSDARG00000011564 I 0.705
nono Danio rerio ENSDARG00000020482 I 0.727
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.737
Nono Dipodomys ordii ENSDORG00000009294 I 0.712
SFPQ Echinops telfairi ENSETEG00000001095 I 0.759
LOC100069588 Equus caballus ENSECAG00000000642 I 0.759
NONO Equus caballus ENSECAG00000008502 I 1.000
NONO Erinaceus europaeus ENSEEUG00000014404 I 1.000
PSPC1_CHICK Gallus gallus ENSGALG00000017142 I 0.705
Q5ZIZ5_CHICK Gallus gallus ENSGALG00000005507 I 0.970
Q91017_CHICK Gallus gallus ENSGALG00000002514 I 0.758
NONO Gasterosteus aculeatus ENSGACG00000011824 I 0.705
ENSGACG00000002034 Gasterosteus aculeatus ENSGACG00000002034 I 0.707
NONO Gorilla gorilla ENSGGOG00000006194 I 1.000
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.759
NONO Homo sapiens ENSG00000147140 D 1.000
SFPQ Homo sapiens ENSG00000116560 D 0.759
NONO Loxodonta africana ENSLAFG00000013422 I 1.000
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.759
LOC697263 Macaca mulatta ENSMMUG00000020481 I 1.000
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.752
NONO Macropus eugenii ENSMEUG00000004294 I 0.985
NONO Meleagris gallopavo ENSMGAG00000008869 I 0.970
NONO Microcebus murinus ENSMICG00000000232 I 1.000
SFPQ Microcebus murinus ENSMICG00000011755 I 0.759
NONO Monodelphis domestica ENSMODG00000004445 I 0.992
ENSMODG00000017937 Monodelphis domestica ENSMODG00000017937 I 0.752
Sfpq Mus musculus ENSMUSG00000028820 I 0.759
Nono Mus musculus ENSMUSG00000031311 I 1.000
NONO Myotis lucifugus ENSMLUG00000002489 I 0.970
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.759
ENSOANG00000008789 Ornithorhynchus anatinus ENSOANG00000008789 I 0.744
ENSOCUG00000021848 Oryctolagus cuniculus ENSOCUG00000021848 I 1.000
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.759
ENSORLG00000007459 Oryzias latipes ENSORLG00000007459 I 0.712
NONO Otolemur garnettii ENSOGAG00000004834 I 1.000
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.759
XR_025068.1 Pan troglodytes ENSPTRG00000022010 I 1.000
ENSPPYG00000001560 Pongo pygmaeus ENSPPYG00000001560 I 0.759
ENSPPYG00000020451 Pongo pygmaeus ENSPPYG00000020451 I 1.000
NONO Procavia capensis ENSPCAG00000002541 I 1.000
SFPQ Procavia capensis ENSPCAG00000006164 I 0.759
NONO Pteropus vampyrus ENSPVAG00000016503 I 1.000
ENSRNOG00000022823 Rattus norvegicus ENSRNOG00000022823 N 0.705
Nono Rattus norvegicus ENSRNOG00000003689 I 1.000
Sfpq Rattus norvegicus ENSRNOG00000013154 I 0.759
NONO Sorex araneus ENSSARG00000007959 I 0.992
SFPQ Spermophilus tridecemlineatus ENSSTOG00000014004 I 0.759
NONO Spermophilus tridecemlineatus ENSSTOG00000015869 I 0.985
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.705
NONO Taeniopygia guttata ENSTGUG00000007048 I 0.970
SFPQ Taeniopygia guttata ENSTGUG00000001722 I 0.758
ENSTRUG00000003783 Takifugu rubripes ENSTRUG00000003783 I 0.750
NONO Takifugu rubripes ENSTRUG00000005554 I 0.705
ENSTSYG00000009311 Tarsius syrichta ENSTSYG00000009311 I 0.727
ENSTNIG00000011331 Tetraodon nigroviridis ENSTNIG00000011331 I 0.735
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.735
NONO Tursiops truncatus ENSTTRG00000009605 I 1.000
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.759
NONO Vicugna pacos ENSVPAG00000002272 I 1.000
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.759
BAE54372 Xenopus laevis BAE54372 I 0.833
AAH45128 Xenopus laevis AAH45128 I 0.833
nono Xenopus tropicalis ENSXETG00000020868 I 0.833
sfpq Xenopus tropicalis ENSXETG00000009682 I 0.758