SLC9A1 (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000005725 T42037_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Fusip1
M088_0.6 		Homo sapiens AGAGAVV RNAcompete
Ray et al.(2013)
RNCMPT00090 		0.819
Fusip1
M087_0.6 		Homo sapiens AGAGARR RNAcompete
Ray et al.(2013)
RNCMPT00089 		0.819
Fusip1
M086_0.6 		Homo sapiens ARAGRRR RNAcompete
Ray et al.(2013)
RNCMPT00088 		0.819
Fusip1
M019_0.6 		Homo sapiens AGAGAVM RNAcompete
Ray et al.(2013)
RNCMPT00019 		0.819
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000008437 RRM 12 82

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

73 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R010918 Ailuropoda melanoleuca Ame_R010918 I 0.726
ENSACAG00000005327 Anolis carolinensis ENSACAG00000005327 I 0.736
Q3ZBU5_BOVIN Bos taurus ENSBTAG00000008072 I 0.831
ENSCJAG00000021801 Callithrix jacchus ENSCJAG00000021801 I 0.764
LOC100387136 Callithrix jacchus ENSCJAG00000020883 I 0.831
ENSCJAG00000010608 Callithrix jacchus ENSCJAG00000010608 I 0.750
ENSCJAG00000007019 Callithrix jacchus ENSCJAG00000007019 I 0.708
LOC100396874 Callithrix jacchus ENSCJAG00000000822 I 0.819
XM_547294.2 Canis familiaris ENSCAFG00000003095 I 0.817
ENSCAFG00000013066 Canis familiaris ENSCAFG00000013066 I 0.822
ENSCPOG00000024533 Cavia porcellus ENSCPOG00000024533 I 0.822
SRSF12 Cavia porcellus ENSCPOG00000010917 I 0.726
SRSF12 Choloepus hoffmanni ENSCHOG00000013911 I 0.726
ENSCHOG00000004836 Choloepus hoffmanni ENSCHOG00000004836 I 0.831
ENSCHOG00000007773 Choloepus hoffmanni ENSCHOG00000007773 I 0.831
ENSCSAVG00000005130 Ciona savignyi ENSCSAVG00000005130 I 0.736
CR293507.1 Danio rerio ENSDARG00000022415 I 0.822
Srsf10 Dipodomys ordii ENSDORG00000009136 I 0.831
SRSF12 Echinops telfairi ENSETEG00000001386 I 0.722
ENSECAG00000023709 Equus caballus ENSECAG00000023709 I 0.712
LOC100070965 Equus caballus ENSECAG00000019135 I 0.726
SRSF12 Erinaceus europaeus ENSEEUG00000011026 I 0.808
ENSEEUG00000014286 Erinaceus europaeus ENSEEUG00000014286 I 0.795
ENSFCAG00000002888 Felis catus ENSFCAG00000002888 I 0.761
Q5ZMR4_CHICK Gallus gallus ENSGALG00000004133 I 0.831
ENSGACG00000002231 Gasterosteus aculeatus ENSGACG00000002231 I 0.932
ENSGGOG00000000392 Gorilla gorilla ENSGGOG00000000392 I 0.822
SRSF12 Gorilla gorilla ENSGGOG00000024850 I 0.726
BX511012.1 Homo sapiens ENSG00000215699 I 0.831
Fusip1 Homo sapiens ENSG00000188529 D 0.831
SRSF12 Homo sapiens ENSG00000154548 I 0.819
ENSLAFG00000026905 Loxodonta africana ENSLAFG00000026905 I 0.822
SRSF12 Loxodonta africana ENSLAFG00000005458 I 0.726
SRSF12 Macaca mulatta ENSMMUG00000014941 I 0.795
ENSMMUG00000013784 Macaca mulatta ENSMMUG00000013784 I 0.831
ENSMGAG00000005772 Meleagris gallopavo ENSMGAG00000005772 I 0.746
ENSMICG00000017029 Microcebus murinus ENSMICG00000017029 I 0.831
XM_001362581.1 Monodelphis domestica ENSMODG00000013020 I 0.795
SRSF12 Monodelphis domestica ENSMODG00000018282 I 0.795
Srsf10 Mus musculus ENSMUSG00000028676 I 0.831
Srsf12 Mus musculus ENSMUSG00000054679 I 0.819
SRSF12 Myotis lucifugus ENSMLUG00000001545 I 0.712
ENSOPRG00000018613 Ochotona princeps ENSOPRG00000018613 I 0.831
ENSOCUG00000021782 Oryctolagus cuniculus ENSOCUG00000021782 I 0.803
ENSOCUG00000024013 Oryctolagus cuniculus ENSOCUG00000024013 I 0.831
SRSF12 Oryctolagus cuniculus ENSOCUG00000000945 I 0.781
SRSF10 Oryzias latipes ENSORLG00000007691 I 0.958
SRSF12 Otolemur garnettii ENSOGAG00000006421 I 0.712
ENSOGAG00000015374 Otolemur garnettii ENSOGAG00000015374 I 0.795
SRSF12 Pan troglodytes ENSPTRG00000018415 I 0.795
XR_020461.1 Pan troglodytes ENSPTRG00000024234 I 0.831
ENSPPYG00000001726 Pongo pygmaeus ENSPPYG00000001726 I 0.831
SRSF12 Procavia capensis ENSPCAG00000010020 I 0.808
ENSPCAG00000004059 Procavia capensis ENSPCAG00000004059 I 0.831
ENSPVAG00000013611 Pteropus vampyrus ENSPVAG00000013611 I 0.831
SRSF12 Pteropus vampyrus ENSPVAG00000001046 I 0.712
D3ZB38_RAT Rattus norvegicus ENSRNOG00000007992 I 0.831
Srrp Rattus norvegicus ENSRNOG00000024247 I 0.819
SRSF12 Sorex araneus ENSSARG00000007795 I 0.712
SRSF12 Spermophilus tridecemlineatus ENSSTOG00000007170 I 0.712
SRSF12 Sus scrofa ENSSSCG00000004313 I 0.808
FUSIP1 Taeniopygia guttata ENSTGUG00000001178 I 0.781
SRSF10 Takifugu rubripes ENSTRUG00000006317 I 0.959
ENSTSYG00000009439 Tarsius syrichta ENSTSYG00000009439 I 0.732
SRSF12 Tarsius syrichta ENSTSYG00000001269 I 0.712
ENSTBEG00000015120 Tupaia belangeri ENSTBEG00000015120 I 0.712
ENSTBEG00000008665 Tupaia belangeri ENSTBEG00000008665 I 0.708
SRSF12 Tursiops truncatus ENSTTRG00000003682 I 0.808
ENSTTRG00000016150 Tursiops truncatus ENSTTRG00000016150 I 0.831
SRSF12 Vicugna pacos ENSVPAG00000004175 I 0.808
AAH46695 Xenopus laevis AAH46695 I 0.792
AAH84231 Xenopus laevis AAH84231 I 0.819
srsf12 Xenopus tropicalis ENSXETG00000005385 I 0.813