CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MYEF2
(
Tetraodon nigroviridis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTNIG00000009526
T42071_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTNIP00000012399
RRM
83
153
VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEDFVKKAIETMNKHDLSGRPLN
ENSTNIP00000012399
RRM
216
285
VFVANLDFKVGWKKLKEVFSMAGVVKRADVKEDKDGKSRGMGTVTFEQPLEAVQAISMLNGQMLFDRQMH
ENSTNIP00000012399
RRM
486
554
IFVRNLSYDLTWQKLKEKFSHCGQVMFAEIKMENGKSKGCGTVRFDSPESAEKACRLMNGSKINGREVD
Links
Other
RRM
family RBPs
Other
Tetraodon nigroviridis
RBPs
70 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
e_gw1.96.1.1
Physcomitrella patens
e_gw1.96.1.1
N
0.000
estExt_Genewise1.C_350182
Physcomitrella patens
estExt_Genewise1.C_350182
N
0.000