ncl (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000009517 T42859_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000021025 RRM 242 310
ENSXETP00000021025 RRM 334 400
ENSXETP00000021025 RRM 424 489
ENSXETP00000021025 RRM 511 578

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

9 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002879403.1 Arabidopsis lyrata fgenesh2_kg.4__1344__AT2G33410.1 N 0.000
XM_002870277.1 Arabidopsis lyrata fgenesh2_kg.7__2913__AT4G14300.1 N 0.000
AT2G33410 Arabidopsis thaliana AT2G33410-TAIR-G N 0.000
AT4G14300 Arabidopsis thaliana AT4G14300-TAIR-G N 0.000
BRADI3G28430 Brachypodium distachyon BRADI3G28430 N 0.000
Cucsa.037090 Cucumis sativus Cucsa.037090 N 0.000
Cucsa.383370 Cucumis sativus Cucsa.383370 N 0.000
Glyma10g33320.1 Glycine max Glyma10g33320.1 N 0.000
Glyma20g34330.1 Glycine max Glyma20g34330.1 N 0.000
MDP0000130865 Malus x domestica MDP0000130865 N 0.000
MDP0000173934 Malus x domestica MDP0000173934 N 0.000
MDP0000217366 Malus x domestica MDP0000217366 N 0.000
MDP0000286430 Malus x domestica MDP0000286430 N 0.000
MDP0000320861 Malus x domestica MDP0000320861 N 0.000
cassava7388.valid.m1 Manihot esculenta cassava7388.valid.m1 N 0.000
cassava12601.valid.m1 Manihot esculenta cassava12601.valid.m1 N 0.000
cassava12600.valid.m1 Manihot esculenta cassava12600.valid.m1 N 0.000
cassava12599.valid.m1 Manihot esculenta cassava12599.valid.m1 N 0.000
cassava12598.valid.m1 Manihot esculenta cassava12598.valid.m1 N 0.000
LOC_Os10g33230 Oryza sativa LOC_Os10g33230 N 0.000
B9IBE6_POPTR Populus trichocarpa POPTR_0014s18470 N 0.000
B9HSS5_POPTR Populus trichocarpa POPTR_0010s07790 N 0.000
B9GRF1_POPTR Populus trichocarpa POPTR_0002s26030 N 0.000
B9HKT4_POPTR Populus trichocarpa POPTR_0008s17030 N 0.000
ppa005309m Prunus persica ppa005309m N 0.000
ppa005979m Prunus persica ppa005979m N 0.000
30008.m000830 Ricinus communis 30008.m000830 N 0.000
Sb01g019610 Sorghum bicolor Sb01g019610 N 0.000
GSVIVG00028394001 Vitis vinifera GSVIVG00028394001 N 0.000
GSVIVG00027891001 Vitis vinifera GSVIVG00027891001 N 0.000
GRMZM2G167505 Zea mays GRMZM2G167505 N 0.000
AC198361.3_FG004 Zea mays AC198361.3_FG004 N 0.000
GRMZM2G176918 Zea mays GRMZM2G176918 N 0.000