MDP0000217366 (Malus x domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 MDP0000217366 T57443_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000217366 RRM 8 76
MDP0000217366 RRM 119 188

Links

Other RRM family RBPs
Other Malus x domestica RBPs

30 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa005309m Prunus persica ppa005309m N 0.957
MDP0000173934 Malus x domestica MDP0000173934 N 0.957
Cucsa.383370 Cucumis sativus Cucsa.383370 N 0.885
PK00513.1 Cannabis sativa PK00513.1 N 0.856
GSVIVG00027891001 Vitis vinifera GSVIVG00027891001 N 0.849
cassava7388.valid.m1 Manihot esculenta cassava7388.valid.m1 N 0.849
Glyma20g34330.1 Glycine max Glyma20g34330.1 N 0.827
B9HKT4_POPTR Populus trichocarpa POPTR_0008s17030 N 0.827
30008.m000830 Ricinus communis 30008.m000830 N 0.820
Glyma10g33320.1 Glycine max Glyma10g33320.1 N 0.813
GSVIVG00028394001 Vitis vinifera GSVIVG00028394001 N 0.813
B9HSS5_POPTR Populus trichocarpa POPTR_0010s07790 N 0.806
Sb01g019610 Sorghum bicolor Sb01g019610 N 0.770
GRMZM2G167505 Zea mays GRMZM2G167505 N 0.763
GRMZM2G176918 Zea mays GRMZM2G176918 N 0.748
ppa005979m Prunus persica ppa005979m N 0.748
AC198361.3_FG004 Zea mays AC198361.3_FG004 N 0.748
cassava12601.valid.m1 Manihot esculenta cassava12601.valid.m1 N 0.741
cassava12600.valid.m1 Manihot esculenta cassava12600.valid.m1 N 0.741
cassava12599.valid.m1 Manihot esculenta cassava12599.valid.m1 N 0.741
cassava12598.valid.m1 Manihot esculenta cassava12598.valid.m1 N 0.741
MDP0000320861 Malus x domestica MDP0000320861 N 0.734
XM_002870277.1 Arabidopsis lyrata fgenesh2_kg.7__2913__AT4G14300.1 N 0.730
MDP0000130865 Malus x domestica MDP0000130865 N 0.727
Cucsa.037090 Cucumis sativus Cucsa.037090 N 0.727
MDP0000286430 Malus x domestica MDP0000286430 N 0.727
AT4G14300 Arabidopsis thaliana AT4G14300-TAIR-G N 0.723
LOC_Os10g33230 Oryza sativa LOC_Os10g33230 N 0.719
B9IBE6_POPTR Populus trichocarpa POPTR_0014s18470 N 0.712
B9GRF1_POPTR Populus trichocarpa POPTR_0002s26030 N 0.712