CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GRMZM2G176918
(
Zea mays
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
GRMZM2G176918
T54195_0.6
MaizeSequence (2009-Oct-16)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G176918_P02
RRM
8
76
LFIGGISWETTEEKLSEHFSAYGEVTQAAVMRDKTTGRPRGFGFVVFADPAVVDRALQDPHTLDGRTVD
GRMZM2G176918_P02
RRM
117
186
IFVGGLPSTLTEDGFRQYFQTFGIVTDVVVMYDQNTQRPRGFGFITFDSEDAVDHVLQKTFHDLGGKLVE
Links
Other
RRM
family RBPs
Other
Zea mays
RBPs
42 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AC198361.3_FG004
Zea mays
AC198361.3_FG004
N
1.000
Sb01g019610
Sorghum bicolor
Sb01g019610
N
0.971
GRMZM2G167505
Zea mays
GRMZM2G167505
N
0.971
BRADI3G28430
Brachypodium distachyon
BRADI3G28430
N
0.871
LOC_Os10g33230
Oryza sativa
LOC_Os10g33230
N
0.856
cassava7388.valid.m1
Manihot esculenta
cassava7388.valid.m1
N
0.806
B9HKT4_POPTR
Populus trichocarpa
POPTR_0008s17030
N
0.799
GSVIVG00028394001
Vitis vinifera
GSVIVG00028394001
N
0.799
B9GRF1_POPTR
Populus trichocarpa
POPTR_0002s26030
N
0.777
PK00513.1
Cannabis sativa
PK00513.1
N
0.777
B9HSS5_POPTR
Populus trichocarpa
POPTR_0010s07790
N
0.777
30008.m000830
Ricinus communis
30008.m000830
N
0.770
GSVIVG00027891001
Vitis vinifera
GSVIVG00027891001
N
0.770
ppa005309m
Prunus persica
ppa005309m
N
0.770
Cucsa.037090
Cucumis sativus
Cucsa.037090
N
0.763
cassava12598.valid.m1
Manihot esculenta
cassava12598.valid.m1
N
0.755
cassava12600.valid.m1
Manihot esculenta
cassava12600.valid.m1
N
0.755
cassava12601.valid.m1
Manihot esculenta
cassava12601.valid.m1
N
0.755
B9IBE6_POPTR
Populus trichocarpa
POPTR_0014s18470
N
0.755
cassava12599.valid.m1
Manihot esculenta
cassava12599.valid.m1
N
0.755
MDP0000173934
Malus x domestica
MDP0000173934
N
0.755
ppa005979m
Prunus persica
ppa005979m
N
0.748
MDP0000217366
Malus x domestica
MDP0000217366
N
0.748
Glyma10g33320.1
Glycine max
Glyma10g33320.1
N
0.741
Cucsa.383370
Cucumis sativus
Cucsa.383370
N
0.741
MDP0000320861
Malus x domestica
MDP0000320861
N
0.734
Glyma20g34330.1
Glycine max
Glyma20g34330.1
N
0.727
MDP0000130865
Malus x domestica
MDP0000130865
N
0.727
chr2.LjT48A12.20.nd
Lotus japonicus
chr2.LjT48A12.20.nd
N
0.721
27613.m000635
Ricinus communis
27613.m000635
N
0.719
MDP0000286430
Malus x domestica
MDP0000286430
N
0.719
cassava31392.valid.m1
Manihot esculenta
cassava31392.valid.m1
N
0.712
XM_002870277.1
Arabidopsis lyrata
fgenesh2_kg.7__2913__AT4G14300.1
N
0.709
AT4G14300
Arabidopsis thaliana
AT4G14300-TAIR-G
N
0.709
chr2.LjT48A12.190.nd
Lotus japonicus
chr2.LjT48A12.190.nd
N
0.705
gw1.3.93.1
Selaginella moellendorfii
gw1.3.93.1
N
0.705
MDP0000609551
Malus x domestica
MDP0000609551
N
0.705
MDP0000188788
Malus x domestica
MDP0000188788
N
0.705
Medtr3g076980
Medicago truncatula
Medtr3g076980
N
0.705
ppa004834m
Prunus persica
ppa004834m
N
0.705
MDP0000204698
Malus x domestica
MDP0000204698
N
0.705
ppa005122m
Prunus persica
ppa005122m
N
0.705