ppa005979m (Prunus persica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ppa005979m T58367_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ppa005979m RRM 8 76
ppa005979m RRM 112 181

Links

Other RRM family RBPs
Other Prunus persica RBPs

32 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000320861 Malus x domestica MDP0000320861 N 0.964
MDP0000130865 Malus x domestica MDP0000130865 N 0.950
MDP0000286430 Malus x domestica MDP0000286430 N 0.935
cassava12601.valid.m1 Manihot esculenta cassava12601.valid.m1 N 0.863
cassava12600.valid.m1 Manihot esculenta cassava12600.valid.m1 N 0.863
cassava12598.valid.m1 Manihot esculenta cassava12598.valid.m1 N 0.863
cassava12599.valid.m1 Manihot esculenta cassava12599.valid.m1 N 0.863
GSVIVG00028394001 Vitis vinifera GSVIVG00028394001 N 0.856
Cucsa.037090 Cucumis sativus Cucsa.037090 N 0.849
cassava7388.valid.m1 Manihot esculenta cassava7388.valid.m1 N 0.827
B9GRF1_POPTR Populus trichocarpa POPTR_0002s26030 N 0.820
30008.m000830 Ricinus communis 30008.m000830 N 0.820
B9IBE6_POPTR Populus trichocarpa POPTR_0014s18470 N 0.799
B9HSS5_POPTR Populus trichocarpa POPTR_0010s07790 N 0.784
Cucsa.383370 Cucumis sativus Cucsa.383370 N 0.777
ppa005309m Prunus persica ppa005309m N 0.777
B9HKT4_POPTR Populus trichocarpa POPTR_0008s17030 N 0.777
Glyma10g33320.1 Glycine max Glyma10g33320.1 N 0.755
Sb01g019610 Sorghum bicolor Sb01g019610 N 0.755
LOC_Os10g33230 Oryza sativa LOC_Os10g33230 N 0.748
MDP0000173934 Malus x domestica MDP0000173934 N 0.748
MDP0000217366 Malus x domestica MDP0000217366 N 0.748
GRMZM2G176918 Zea mays GRMZM2G176918 N 0.748
GSVIVG00027891001 Vitis vinifera GSVIVG00027891001 N 0.748
AC198361.3_FG004 Zea mays AC198361.3_FG004 N 0.748
GRMZM2G167505 Zea mays GRMZM2G167505 N 0.748
PK00513.1 Cannabis sativa PK00513.1 N 0.741
Glyma20g34330.1 Glycine max Glyma20g34330.1 N 0.741
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.727
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.705
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.705
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.705