CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ppa005979m
(
Prunus persica
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ppa005979m
T58367_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ppa005979m
RRM
8
76
LFIGGLAWDTTEDKLTDYFNQYGDVTQTVIMRDKTTGRPRGFGFVVFSDPSVLDRVLNDKHTIDGRLVE
ppa005979m
RRM
112
181
IFVGGLPSTLTEDGFRQFFENYGTVTDVVIMYDQNTQRPRGFGFITFDTEDAVDRVLHKNYHELNGKLVE
Links
Other
RRM
family RBPs
Other
Prunus persica
RBPs
32 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MDP0000320861
Malus x domestica
MDP0000320861
N
0.964
MDP0000130865
Malus x domestica
MDP0000130865
N
0.950
MDP0000286430
Malus x domestica
MDP0000286430
N
0.935
cassava12601.valid.m1
Manihot esculenta
cassava12601.valid.m1
N
0.863
cassava12600.valid.m1
Manihot esculenta
cassava12600.valid.m1
N
0.863
cassava12598.valid.m1
Manihot esculenta
cassava12598.valid.m1
N
0.863
cassava12599.valid.m1
Manihot esculenta
cassava12599.valid.m1
N
0.863
GSVIVG00028394001
Vitis vinifera
GSVIVG00028394001
N
0.856
Cucsa.037090
Cucumis sativus
Cucsa.037090
N
0.849
cassava7388.valid.m1
Manihot esculenta
cassava7388.valid.m1
N
0.827
B9GRF1_POPTR
Populus trichocarpa
POPTR_0002s26030
N
0.820
30008.m000830
Ricinus communis
30008.m000830
N
0.820
B9IBE6_POPTR
Populus trichocarpa
POPTR_0014s18470
N
0.799
B9HSS5_POPTR
Populus trichocarpa
POPTR_0010s07790
N
0.784
Cucsa.383370
Cucumis sativus
Cucsa.383370
N
0.777
ppa005309m
Prunus persica
ppa005309m
N
0.777
B9HKT4_POPTR
Populus trichocarpa
POPTR_0008s17030
N
0.777
Glyma10g33320.1
Glycine max
Glyma10g33320.1
N
0.755
Sb01g019610
Sorghum bicolor
Sb01g019610
N
0.755
LOC_Os10g33230
Oryza sativa
LOC_Os10g33230
N
0.748
MDP0000173934
Malus x domestica
MDP0000173934
N
0.748
MDP0000217366
Malus x domestica
MDP0000217366
N
0.748
GRMZM2G176918
Zea mays
GRMZM2G176918
N
0.748
GSVIVG00027891001
Vitis vinifera
GSVIVG00027891001
N
0.748
AC198361.3_FG004
Zea mays
AC198361.3_FG004
N
0.748
GRMZM2G167505
Zea mays
GRMZM2G167505
N
0.748
PK00513.1
Cannabis sativa
PK00513.1
N
0.741
Glyma20g34330.1
Glycine max
Glyma20g34330.1
N
0.741
gw1.3.93.1
Selaginella moellendorfii
gw1.3.93.1
N
0.727
AT5G55550
Arabidopsis thaliana
AT5G55550-TAIR-G
N
0.705
Glyma18g09090.1
Glycine max
Glyma18g09090.1
N
0.705
Glyma08g43740.1
Glycine max
Glyma08g43740.1
N
0.705