B9IBE6_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0014s18470 T45659_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0014s18470.1 RRM 8 76
POPTR_0014s18470.1 RRM 98 167

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

29 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9GRF1_POPTR Populus trichocarpa POPTR_0002s26030 N 0.899
cassava12601.valid.m1 Manihot esculenta cassava12601.valid.m1 N 0.849
cassava12599.valid.m1 Manihot esculenta cassava12599.valid.m1 N 0.849
cassava12600.valid.m1 Manihot esculenta cassava12600.valid.m1 N 0.849
cassava12598.valid.m1 Manihot esculenta cassava12598.valid.m1 N 0.849
Cucsa.037090 Cucumis sativus Cucsa.037090 N 0.827
MDP0000320861 Malus x domestica MDP0000320861 N 0.799
ppa005979m Prunus persica ppa005979m N 0.799
GSVIVG00028394001 Vitis vinifera GSVIVG00028394001 N 0.791
cassava7388.valid.m1 Manihot esculenta cassava7388.valid.m1 N 0.784
MDP0000130865 Malus x domestica MDP0000130865 N 0.784
MDP0000286430 Malus x domestica MDP0000286430 N 0.777
B9HSS5_POPTR Populus trichocarpa POPTR_0010s07790 N 0.763
LOC_Os10g33230 Oryza sativa LOC_Os10g33230 N 0.755
GRMZM2G176918 Zea mays GRMZM2G176918 N 0.755
30008.m000830 Ricinus communis 30008.m000830 N 0.755
AC198361.3_FG004 Zea mays AC198361.3_FG004 N 0.755
GSVIVG00027891001 Vitis vinifera GSVIVG00027891001 N 0.748
B9HKT4_POPTR Populus trichocarpa POPTR_0008s17030 N 0.741
Sb01g019610 Sorghum bicolor Sb01g019610 N 0.741
GRMZM2G167505 Zea mays GRMZM2G167505 N 0.741
ppa005309m Prunus persica ppa005309m N 0.734
PK00513.1 Cannabis sativa PK00513.1 N 0.734
Cucsa.383370 Cucumis sativus Cucsa.383370 N 0.734
Glyma10g33320.1 Glycine max Glyma10g33320.1 N 0.719
MDP0000173934 Malus x domestica MDP0000173934 N 0.719
MDP0000217366 Malus x domestica MDP0000217366 N 0.712
Glyma20g34330.1 Glycine max Glyma20g34330.1 N 0.712
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.705