CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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B9IBE6_POPTR
(
Populus trichocarpa
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
POPTR_0014s18470
T45659_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0014s18470.1
RRM
8
76
LFIGGIAWDTTEETLRDHFNLYGEVSQVVIMRDKTTGRPRGFGFVVFSDPSLLDPVLQDKHTIDGRSVM
POPTR_0014s18470.1
RRM
98
167
IFVGGLPPTLMEDAFRQYFQSYGHVCDVVLMYDQQTQRPRGFGFITFDTEDAVDNVLQKTFHELNGKLVE
Links
Other
RRM
family RBPs
Other
Populus trichocarpa
RBPs
29 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
B9GRF1_POPTR
Populus trichocarpa
POPTR_0002s26030
N
0.899
cassava12601.valid.m1
Manihot esculenta
cassava12601.valid.m1
N
0.849
cassava12599.valid.m1
Manihot esculenta
cassava12599.valid.m1
N
0.849
cassava12600.valid.m1
Manihot esculenta
cassava12600.valid.m1
N
0.849
cassava12598.valid.m1
Manihot esculenta
cassava12598.valid.m1
N
0.849
Cucsa.037090
Cucumis sativus
Cucsa.037090
N
0.827
MDP0000320861
Malus x domestica
MDP0000320861
N
0.799
ppa005979m
Prunus persica
ppa005979m
N
0.799
GSVIVG00028394001
Vitis vinifera
GSVIVG00028394001
N
0.791
cassava7388.valid.m1
Manihot esculenta
cassava7388.valid.m1
N
0.784
MDP0000130865
Malus x domestica
MDP0000130865
N
0.784
MDP0000286430
Malus x domestica
MDP0000286430
N
0.777
B9HSS5_POPTR
Populus trichocarpa
POPTR_0010s07790
N
0.763
LOC_Os10g33230
Oryza sativa
LOC_Os10g33230
N
0.755
GRMZM2G176918
Zea mays
GRMZM2G176918
N
0.755
30008.m000830
Ricinus communis
30008.m000830
N
0.755
AC198361.3_FG004
Zea mays
AC198361.3_FG004
N
0.755
GSVIVG00027891001
Vitis vinifera
GSVIVG00027891001
N
0.748
B9HKT4_POPTR
Populus trichocarpa
POPTR_0008s17030
N
0.741
Sb01g019610
Sorghum bicolor
Sb01g019610
N
0.741
GRMZM2G167505
Zea mays
GRMZM2G167505
N
0.741
ppa005309m
Prunus persica
ppa005309m
N
0.734
PK00513.1
Cannabis sativa
PK00513.1
N
0.734
Cucsa.383370
Cucumis sativus
Cucsa.383370
N
0.734
Glyma10g33320.1
Glycine max
Glyma10g33320.1
N
0.719
MDP0000173934
Malus x domestica
MDP0000173934
N
0.719
MDP0000217366
Malus x domestica
MDP0000217366
N
0.712
Glyma20g34330.1
Glycine max
Glyma20g34330.1
N
0.712
gw1.3.93.1
Selaginella moellendorfii
gw1.3.93.1
N
0.705