GSVIVG00028394001 (Vitis vinifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 GSVIVG00028394001 T44749_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GSVIVT00028394001 RRM 8 76
GSVIVT00028394001 RRM 112 181

Links

Other RRM family RBPs
Other Vitis vinifera RBPs

64 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava7388.valid.m1 Manihot esculenta cassava7388.valid.m1 N 0.878
ppa005979m Prunus persica ppa005979m N 0.856
ppa005309m Prunus persica ppa005309m N 0.849
30008.m000830 Ricinus communis 30008.m000830 N 0.842
cassava12599.valid.m1 Manihot esculenta cassava12599.valid.m1 N 0.835
cassava12601.valid.m1 Manihot esculenta cassava12601.valid.m1 N 0.835
cassava12600.valid.m1 Manihot esculenta cassava12600.valid.m1 N 0.835
cassava12598.valid.m1 Manihot esculenta cassava12598.valid.m1 N 0.835
GSVIVG00027891001 Vitis vinifera GSVIVG00027891001 N 0.835
MDP0000320861 Malus x domestica MDP0000320861 N 0.827
PK00513.1 Cannabis sativa PK00513.1 N 0.827
B9HKT4_POPTR Populus trichocarpa POPTR_0008s17030 N 0.820
Cucsa.383370 Cucumis sativus Cucsa.383370 N 0.820
B9GRF1_POPTR Populus trichocarpa POPTR_0002s26030 N 0.820
Cucsa.037090 Cucumis sativus Cucsa.037090 N 0.820
MDP0000173934 Malus x domestica MDP0000173934 N 0.813
MDP0000217366 Malus x domestica MDP0000217366 N 0.813
B9HSS5_POPTR Populus trichocarpa POPTR_0010s07790 N 0.806
Glyma10g33320.1 Glycine max Glyma10g33320.1 N 0.806
Sb01g019610 Sorghum bicolor Sb01g019610 N 0.806
MDP0000130865 Malus x domestica MDP0000130865 N 0.806
GRMZM2G176918 Zea mays GRMZM2G176918 N 0.799
GRMZM2G167505 Zea mays GRMZM2G167505 N 0.799
Glyma20g34330.1 Glycine max Glyma20g34330.1 N 0.799
AC198361.3_FG004 Zea mays AC198361.3_FG004 N 0.799
MDP0000286430 Malus x domestica MDP0000286430 N 0.791
B9IBE6_POPTR Populus trichocarpa POPTR_0014s18470 N 0.791
LOC_Os10g33230 Oryza sativa LOC_Os10g33230 N 0.777
BRADI3G28430 Brachypodium distachyon BRADI3G28430 N 0.748
27613.m000635 Ricinus communis 27613.m000635 N 0.734
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.727
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.727
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.727
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.727
AT4G14300 Arabidopsis thaliana AT4G14300-TAIR-G N 0.723
XM_002870277.1 Arabidopsis lyrata fgenesh2_kg.7__2913__AT4G14300.1 N 0.723
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.719
PK25912.1 Cannabis sativa PK25912.1 N 0.719
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.719
ppa004834m Prunus persica ppa004834m N 0.719
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.719
MDP0000204698 Malus x domestica MDP0000204698 N 0.719
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.719
ppa005122m Prunus persica ppa005122m N 0.719
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.714
ppa005119m Prunus persica ppa005119m N 0.712
ppa005132m Prunus persica ppa005132m N 0.712
MDP0000188788 Malus x domestica MDP0000188788 N 0.712
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.712
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.712
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.712
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.712
MDP0000609551 Malus x domestica MDP0000609551 N 0.712
29608.m000212 Ricinus communis 29608.m000212 N 0.712
AT4G26650 Arabidopsis thaliana AT4G26650-TAIR-G N 0.705
XM_002869554.1 Arabidopsis lyrata fgenesh2_kg.7__1574__AT4G26650.1 N 0.705
MDP0000320618 Malus x domestica MDP0000320618 N 0.705
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.705
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.705
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.705
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.705
MDP0000907782 Malus x domestica MDP0000907782 N 0.705
cassava10847.m1 Manihot esculenta cassava10847.m1 N 0.705
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.705