CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GSVIVG00028394001
(
Vitis vinifera
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
GSVIVG00028394001
T44749_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GSVIVT00028394001
RRM
8
76
LFVGGIPWDTTEEKLKEYFNQYGDVTQTVIMRDKTTGRPRGFGFVVFADPSVLDAVLQEKHTIDGRTVE
GSVIVT00028394001
RRM
112
181
IFVGGLPSTLTEEGFRQYFETYGHVTDVVVMYDQNTQRPRGFGFISFDTEDAVDRVLHKTFHDLNGKLVE
Links
Other
RRM
family RBPs
Other
Vitis vinifera
RBPs
64 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
cassava7388.valid.m1
Manihot esculenta
cassava7388.valid.m1
N
0.878
ppa005979m
Prunus persica
ppa005979m
N
0.856
ppa005309m
Prunus persica
ppa005309m
N
0.849
30008.m000830
Ricinus communis
30008.m000830
N
0.842
cassava12599.valid.m1
Manihot esculenta
cassava12599.valid.m1
N
0.835
cassava12601.valid.m1
Manihot esculenta
cassava12601.valid.m1
N
0.835
cassava12600.valid.m1
Manihot esculenta
cassava12600.valid.m1
N
0.835
cassava12598.valid.m1
Manihot esculenta
cassava12598.valid.m1
N
0.835
GSVIVG00027891001
Vitis vinifera
GSVIVG00027891001
N
0.835
MDP0000320861
Malus x domestica
MDP0000320861
N
0.827
PK00513.1
Cannabis sativa
PK00513.1
N
0.827
B9HKT4_POPTR
Populus trichocarpa
POPTR_0008s17030
N
0.820
Cucsa.383370
Cucumis sativus
Cucsa.383370
N
0.820
B9GRF1_POPTR
Populus trichocarpa
POPTR_0002s26030
N
0.820
Cucsa.037090
Cucumis sativus
Cucsa.037090
N
0.820
MDP0000173934
Malus x domestica
MDP0000173934
N
0.813
MDP0000217366
Malus x domestica
MDP0000217366
N
0.813
B9HSS5_POPTR
Populus trichocarpa
POPTR_0010s07790
N
0.806
Glyma10g33320.1
Glycine max
Glyma10g33320.1
N
0.806
Sb01g019610
Sorghum bicolor
Sb01g019610
N
0.806
MDP0000130865
Malus x domestica
MDP0000130865
N
0.806
GRMZM2G176918
Zea mays
GRMZM2G176918
N
0.799
GRMZM2G167505
Zea mays
GRMZM2G167505
N
0.799
Glyma20g34330.1
Glycine max
Glyma20g34330.1
N
0.799
AC198361.3_FG004
Zea mays
AC198361.3_FG004
N
0.799
MDP0000286430
Malus x domestica
MDP0000286430
N
0.791
B9IBE6_POPTR
Populus trichocarpa
POPTR_0014s18470
N
0.791
LOC_Os10g33230
Oryza sativa
LOC_Os10g33230
N
0.777
BRADI3G28430
Brachypodium distachyon
BRADI3G28430
N
0.748
27613.m000635
Ricinus communis
27613.m000635
N
0.734
cassava31392.valid.m1
Manihot esculenta
cassava31392.valid.m1
N
0.727
B9I165_POPTR
Populus trichocarpa
POPTR_0011s09050
N
0.727
XM_002862650.1
Arabidopsis lyrata
fgenesh2_kg.8__1457__AT5G55550.1
N
0.727
Glyma08g43740.1
Glycine max
Glyma08g43740.1
N
0.727
AT4G14300
Arabidopsis thaliana
AT4G14300-TAIR-G
N
0.723
XM_002870277.1
Arabidopsis lyrata
fgenesh2_kg.7__2913__AT4G14300.1
N
0.723
Glyma18g09090.1
Glycine max
Glyma18g09090.1
N
0.719
PK25912.1
Cannabis sativa
PK25912.1
N
0.719
Glyma02g46650.1
Glycine max
Glyma02g46650.1
N
0.719
ppa004834m
Prunus persica
ppa004834m
N
0.719
B9GJW8_POPTR
Populus trichocarpa
POPTR_0001s37230
N
0.719
MDP0000204698
Malus x domestica
MDP0000204698
N
0.719
AT5G55550
Arabidopsis thaliana
AT5G55550-TAIR-G
N
0.719
ppa005122m
Prunus persica
ppa005122m
N
0.719
chr2.LjT48A12.20.nd
Lotus japonicus
chr2.LjT48A12.20.nd
N
0.714
ppa005119m
Prunus persica
ppa005119m
N
0.712
ppa005132m
Prunus persica
ppa005132m
N
0.712
MDP0000188788
Malus x domestica
MDP0000188788
N
0.712
Cucsa.120420
Cucumis sativus
Cucsa.120420
N
0.712
Glyma14g02020.1
Glycine max
Glyma14g02020.1
N
0.712
gw1.3.93.1
Selaginella moellendorfii
gw1.3.93.1
N
0.712
Medtr3g076980
Medicago truncatula
Medtr3g076980
N
0.712
MDP0000609551
Malus x domestica
MDP0000609551
N
0.712
29608.m000212
Ricinus communis
29608.m000212
N
0.712
AT4G26650
Arabidopsis thaliana
AT4G26650-TAIR-G
N
0.705
XM_002869554.1
Arabidopsis lyrata
fgenesh2_kg.7__1574__AT4G26650.1
N
0.705
MDP0000320618
Malus x domestica
MDP0000320618
N
0.705
Cucsa.042370
Cucumis sativus
Cucsa.042370
N
0.705
GSVIVG00037771001
Vitis vinifera
GSVIVG00037771001
N
0.705
Medtr5g105300
Medicago truncatula
Medtr5g105300
N
0.705
chr6.LjT16B20.40.nc
Lotus japonicus
chr6.LjT16B20.40.nc
N
0.705
MDP0000907782
Malus x domestica
MDP0000907782
N
0.705
cassava10847.m1
Manihot esculenta
cassava10847.m1
N
0.705
B9HCV4_POPTR
Populus trichocarpa
POPTR_0006s01680
N
0.705