cassava12600.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava12600.valid.m1 T49107_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava12600.valid.m1 RRM 8 76
cassava12600.valid.m1 RRM 112 181

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

31 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava12599.valid.m1 Manihot esculenta cassava12599.valid.m1 N 1.000
cassava12601.valid.m1 Manihot esculenta cassava12601.valid.m1 N 1.000
cassava12598.valid.m1 Manihot esculenta cassava12598.valid.m1 N 1.000
ppa005979m Prunus persica ppa005979m N 0.863
B9IBE6_POPTR Populus trichocarpa POPTR_0014s18470 N 0.849
Cucsa.037090 Cucumis sativus Cucsa.037090 N 0.842
B9GRF1_POPTR Populus trichocarpa POPTR_0002s26030 N 0.842
MDP0000320861 Malus x domestica MDP0000320861 N 0.842
GSVIVG00028394001 Vitis vinifera GSVIVG00028394001 N 0.835
cassava7388.valid.m1 Manihot esculenta cassava7388.valid.m1 N 0.835
MDP0000130865 Malus x domestica MDP0000130865 N 0.820
MDP0000286430 Malus x domestica MDP0000286430 N 0.806
30008.m000830 Ricinus communis 30008.m000830 N 0.806
B9HKT4_POPTR Populus trichocarpa POPTR_0008s17030 N 0.777
B9HSS5_POPTR Populus trichocarpa POPTR_0010s07790 N 0.777
GSVIVG00027891001 Vitis vinifera GSVIVG00027891001 N 0.770
LOC_Os10g33230 Oryza sativa LOC_Os10g33230 N 0.770
ppa005309m Prunus persica ppa005309m N 0.770
Cucsa.383370 Cucumis sativus Cucsa.383370 N 0.763
Sb01g019610 Sorghum bicolor Sb01g019610 N 0.763
GRMZM2G167505 Zea mays GRMZM2G167505 N 0.763
Glyma10g33320.1 Glycine max Glyma10g33320.1 N 0.755
GRMZM2G176918 Zea mays GRMZM2G176918 N 0.755
AC198361.3_FG004 Zea mays AC198361.3_FG004 N 0.755
Glyma20g34330.1 Glycine max Glyma20g34330.1 N 0.748
MDP0000173934 Malus x domestica MDP0000173934 N 0.741
PK00513.1 Cannabis sativa PK00513.1 N 0.741
MDP0000217366 Malus x domestica MDP0000217366 N 0.741
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.712
BRADI3G28430 Brachypodium distachyon BRADI3G28430 N 0.705
AT4G14300 Arabidopsis thaliana AT4G14300-TAIR-G N 0.702