GSVIVG00027891001 (Vitis vinifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 GSVIVG00027891001 T44743_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GSVIVT00027891001 RRM 8 76
GSVIVT00027891001 RRM 112 181

Links

Other RRM family RBPs
Other Vitis vinifera RBPs

48 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa005309m Prunus persica ppa005309m N 0.871
cassava7388.valid.m1 Manihot esculenta cassava7388.valid.m1 N 0.856
MDP0000173934 Malus x domestica MDP0000173934 N 0.856
MDP0000217366 Malus x domestica MDP0000217366 N 0.849
Cucsa.383370 Cucumis sativus Cucsa.383370 N 0.842
PK00513.1 Cannabis sativa PK00513.1 N 0.842
30008.m000830 Ricinus communis 30008.m000830 N 0.835
B9HKT4_POPTR Populus trichocarpa POPTR_0008s17030 N 0.835
B9HSS5_POPTR Populus trichocarpa POPTR_0010s07790 N 0.835
GSVIVG00028394001 Vitis vinifera GSVIVG00028394001 N 0.835
Glyma10g33320.1 Glycine max Glyma10g33320.1 N 0.806
Glyma20g34330.1 Glycine max Glyma20g34330.1 N 0.799
GRMZM2G167505 Zea mays GRMZM2G167505 N 0.784
Sb01g019610 Sorghum bicolor Sb01g019610 N 0.777
cassava12599.valid.m1 Manihot esculenta cassava12599.valid.m1 N 0.770
GRMZM2G176918 Zea mays GRMZM2G176918 N 0.770
AC198361.3_FG004 Zea mays AC198361.3_FG004 N 0.770
Cucsa.037090 Cucumis sativus Cucsa.037090 N 0.770
cassava12598.valid.m1 Manihot esculenta cassava12598.valid.m1 N 0.770
cassava12600.valid.m1 Manihot esculenta cassava12600.valid.m1 N 0.770
cassava12601.valid.m1 Manihot esculenta cassava12601.valid.m1 N 0.770
XM_002870277.1 Arabidopsis lyrata fgenesh2_kg.7__2913__AT4G14300.1 N 0.766
AT4G14300 Arabidopsis thaliana AT4G14300-TAIR-G N 0.766
MDP0000320861 Malus x domestica MDP0000320861 N 0.748
B9IBE6_POPTR Populus trichocarpa POPTR_0014s18470 N 0.748
ppa005979m Prunus persica ppa005979m N 0.748
BRADI3G28430 Brachypodium distachyon BRADI3G28430 N 0.741
B9GRF1_POPTR Populus trichocarpa POPTR_0002s26030 N 0.741
LOC_Os10g33230 Oryza sativa LOC_Os10g33230 N 0.734
MDP0000130865 Malus x domestica MDP0000130865 N 0.727
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.727
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.727
PK25912.1 Cannabis sativa PK25912.1 N 0.719
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.719
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.719
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.719
mgf009385m Mimulus guttatus mgf009385m N 0.712
MDP0000286430 Malus x domestica MDP0000286430 N 0.712
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.707
ppa005122m Prunus persica ppa005122m N 0.705
chr2.LjT48A12.190.nd Lotus japonicus chr2.LjT48A12.190.nd N 0.705
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.705
27613.m000635 Ricinus communis 27613.m000635 N 0.705
MDP0000188788 Malus x domestica MDP0000188788 N 0.705
MDP0000204698 Malus x domestica MDP0000204698 N 0.705
ppa004834m Prunus persica ppa004834m N 0.705
MDP0000609551 Malus x domestica MDP0000609551 N 0.705
LOC_Os11g41890 Oryza sativa LOC_Os11g41890 N 0.700