CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MDP0000286430
(
Malus x domestica
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
MDP0000286430
T57575_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
MDP0000286430
RRM
8
76
LFIGGLAWDTNEDKLTDYFNQYGDVTQTVIMRDKVTGRPRGFGFVVFSDPSLIDRVLNDKHTIDGRLLF
MDP0000286430
RRM
133
202
IFVGGLPSTLTEDGFREFFENYGTVTDVVIMYDQNTQRPRGFGFITFDTEDAVDGVLQKNYHELNGKLVE
Links
Other
RRM
family RBPs
Other
Malus x domestica
RBPs
29 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MDP0000130865
Malus x domestica
MDP0000130865
N
0.986
MDP0000320861
Malus x domestica
MDP0000320861
N
0.957
ppa005979m
Prunus persica
ppa005979m
N
0.935
Cucsa.037090
Cucumis sativus
Cucsa.037090
N
0.813
cassava12598.valid.m1
Manihot esculenta
cassava12598.valid.m1
N
0.806
cassava12600.valid.m1
Manihot esculenta
cassava12600.valid.m1
N
0.806
cassava12601.valid.m1
Manihot esculenta
cassava12601.valid.m1
N
0.806
cassava12599.valid.m1
Manihot esculenta
cassava12599.valid.m1
N
0.806
GSVIVG00028394001
Vitis vinifera
GSVIVG00028394001
N
0.791
B9GRF1_POPTR
Populus trichocarpa
POPTR_0002s26030
N
0.784
B9IBE6_POPTR
Populus trichocarpa
POPTR_0014s18470
N
0.777
cassava7388.valid.m1
Manihot esculenta
cassava7388.valid.m1
N
0.777
30008.m000830
Ricinus communis
30008.m000830
N
0.763
ppa005309m
Prunus persica
ppa005309m
N
0.748
B9HSS5_POPTR
Populus trichocarpa
POPTR_0010s07790
N
0.741
Cucsa.383370
Cucumis sativus
Cucsa.383370
N
0.741
B9HKT4_POPTR
Populus trichocarpa
POPTR_0008s17030
N
0.741
MDP0000173934
Malus x domestica
MDP0000173934
N
0.734
MDP0000217366
Malus x domestica
MDP0000217366
N
0.727
GRMZM2G167505
Zea mays
GRMZM2G167505
N
0.727
GRMZM2G176918
Zea mays
GRMZM2G176918
N
0.719
AC198361.3_FG004
Zea mays
AC198361.3_FG004
N
0.719
GSVIVG00027891001
Vitis vinifera
GSVIVG00027891001
N
0.712
Sb01g019610
Sorghum bicolor
Sb01g019610
N
0.712
LOC_Os10g33230
Oryza sativa
LOC_Os10g33230
N
0.712
Glyma10g33320.1
Glycine max
Glyma10g33320.1
N
0.712
PK00513.1
Cannabis sativa
PK00513.1
N
0.705
Glyma20g34330.1
Glycine max
Glyma20g34330.1
N
0.705
gw1.3.93.1
Selaginella moellendorfii
gw1.3.93.1
N
0.705