B9GRF1_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0002s26030 T45477_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0002s26030.1 RRM 8 76
POPTR_0002s26030.1 RRM 94 163

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

34 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9IBE6_POPTR Populus trichocarpa POPTR_0014s18470 N 0.899
cassava12600.valid.m1 Manihot esculenta cassava12600.valid.m1 N 0.842
cassava12601.valid.m1 Manihot esculenta cassava12601.valid.m1 N 0.842
cassava12598.valid.m1 Manihot esculenta cassava12598.valid.m1 N 0.842
cassava12599.valid.m1 Manihot esculenta cassava12599.valid.m1 N 0.842
Cucsa.037090 Cucumis sativus Cucsa.037090 N 0.820
ppa005979m Prunus persica ppa005979m N 0.820
GSVIVG00028394001 Vitis vinifera GSVIVG00028394001 N 0.820
MDP0000320861 Malus x domestica MDP0000320861 N 0.806
MDP0000130865 Malus x domestica MDP0000130865 N 0.791
MDP0000286430 Malus x domestica MDP0000286430 N 0.784
cassava7388.valid.m1 Manihot esculenta cassava7388.valid.m1 N 0.784
GRMZM2G176918 Zea mays GRMZM2G176918 N 0.777
AC198361.3_FG004 Zea mays AC198361.3_FG004 N 0.777
Sb01g019610 Sorghum bicolor Sb01g019610 N 0.763
LOC_Os10g33230 Oryza sativa LOC_Os10g33230 N 0.763
30008.m000830 Ricinus communis 30008.m000830 N 0.755
GRMZM2G167505 Zea mays GRMZM2G167505 N 0.755
B9HSS5_POPTR Populus trichocarpa POPTR_0010s07790 N 0.748
B9HKT4_POPTR Populus trichocarpa POPTR_0008s17030 N 0.748
GSVIVG00027891001 Vitis vinifera GSVIVG00027891001 N 0.741
Cucsa.383370 Cucumis sativus Cucsa.383370 N 0.741
ppa005309m Prunus persica ppa005309m N 0.734
PK00513.1 Cannabis sativa PK00513.1 N 0.734
Glyma10g33320.1 Glycine max Glyma10g33320.1 N 0.719
MDP0000173934 Malus x domestica MDP0000173934 N 0.719
BRADI3G28430 Brachypodium distachyon BRADI3G28430 N 0.712
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.712
MDP0000217366 Malus x domestica MDP0000217366 N 0.712
Glyma20g34330.1 Glycine max Glyma20g34330.1 N 0.712
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.705
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.705
AT4G14300 Arabidopsis thaliana AT4G14300-TAIR-G N 0.702
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.700