Cucsa.037090 (Cucumis sativus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Cucsa.037090 T49520_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.037090.1 RRM 8 76
Cucsa.037090.1 RRM 112 181

Links

Other RRM family RBPs
Other Cucumis sativus RBPs

51 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000320861 Malus x domestica MDP0000320861 N 0.849
ppa005979m Prunus persica ppa005979m N 0.849
cassava12601.valid.m1 Manihot esculenta cassava12601.valid.m1 N 0.842
cassava12599.valid.m1 Manihot esculenta cassava12599.valid.m1 N 0.842
cassava12598.valid.m1 Manihot esculenta cassava12598.valid.m1 N 0.842
cassava12600.valid.m1 Manihot esculenta cassava12600.valid.m1 N 0.842
MDP0000130865 Malus x domestica MDP0000130865 N 0.827
B9IBE6_POPTR Populus trichocarpa POPTR_0014s18470 N 0.827
B9GRF1_POPTR Populus trichocarpa POPTR_0002s26030 N 0.820
cassava7388.valid.m1 Manihot esculenta cassava7388.valid.m1 N 0.820
GSVIVG00028394001 Vitis vinifera GSVIVG00028394001 N 0.820
30008.m000830 Ricinus communis 30008.m000830 N 0.813
B9HSS5_POPTR Populus trichocarpa POPTR_0010s07790 N 0.813
MDP0000286430 Malus x domestica MDP0000286430 N 0.813
B9HKT4_POPTR Populus trichocarpa POPTR_0008s17030 N 0.777
GSVIVG00027891001 Vitis vinifera GSVIVG00027891001 N 0.770
GRMZM2G167505 Zea mays GRMZM2G167505 N 0.770
Cucsa.383370 Cucumis sativus Cucsa.383370 N 0.770
Sb01g019610 Sorghum bicolor Sb01g019610 N 0.763
AC198361.3_FG004 Zea mays AC198361.3_FG004 N 0.763
LOC_Os10g33230 Oryza sativa LOC_Os10g33230 N 0.763
GRMZM2G176918 Zea mays GRMZM2G176918 N 0.763
ppa005309m Prunus persica ppa005309m N 0.755
PK00513.1 Cannabis sativa PK00513.1 N 0.741
MDP0000173934 Malus x domestica MDP0000173934 N 0.734
Glyma10g33320.1 Glycine max Glyma10g33320.1 N 0.727
MDP0000217366 Malus x domestica MDP0000217366 N 0.727
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.727
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.719
BRADI3G28430 Brachypodium distachyon BRADI3G28430 N 0.719
SB02G005620 Sorghum bicolor Sb02g005620 N 0.719
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.719
SB02G005670 Sorghum bicolor Sb02g005670 N 0.719
Glyma20g34330.1 Glycine max Glyma20g34330.1 N 0.712
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.712
GRMZM2G013065 Zea mays GRMZM2G013065 N 0.712
MDP0000320618 Malus x domestica MDP0000320618 N 0.712
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.712
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.712
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.712
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.712
27613.m000635 Ricinus communis 27613.m000635 N 0.712
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.712
ppa005119m Prunus persica ppa005119m N 0.705
MDP0000907782 Malus x domestica MDP0000907782 N 0.705
MDP0000642684 Malus x domestica MDP0000642684 N 0.705
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.705
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.705
ppa005132m Prunus persica ppa005132m N 0.705
XM_002870277.1 Arabidopsis lyrata fgenesh2_kg.7__2913__AT4G14300.1 N 0.702
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.700