CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Cucsa.037090
(
Cucumis sativus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Cucsa.037090
T49520_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.037090.1
RRM
8
76
LFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSLLDQVLQDKHTIDGRQVE
Cucsa.037090.1
RRM
112
181
IFVGGLPSALTEDGFRQYFESYGQVTDVVIMYDQNTQRPRGFGFITFDNEDAVDRVLYKSFHELNGKLVE
Links
Other
RRM
family RBPs
Other
Cucumis sativus
RBPs
51 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MDP0000320861
Malus x domestica
MDP0000320861
N
0.849
ppa005979m
Prunus persica
ppa005979m
N
0.849
cassava12601.valid.m1
Manihot esculenta
cassava12601.valid.m1
N
0.842
cassava12599.valid.m1
Manihot esculenta
cassava12599.valid.m1
N
0.842
cassava12598.valid.m1
Manihot esculenta
cassava12598.valid.m1
N
0.842
cassava12600.valid.m1
Manihot esculenta
cassava12600.valid.m1
N
0.842
MDP0000130865
Malus x domestica
MDP0000130865
N
0.827
B9IBE6_POPTR
Populus trichocarpa
POPTR_0014s18470
N
0.827
B9GRF1_POPTR
Populus trichocarpa
POPTR_0002s26030
N
0.820
cassava7388.valid.m1
Manihot esculenta
cassava7388.valid.m1
N
0.820
GSVIVG00028394001
Vitis vinifera
GSVIVG00028394001
N
0.820
30008.m000830
Ricinus communis
30008.m000830
N
0.813
B9HSS5_POPTR
Populus trichocarpa
POPTR_0010s07790
N
0.813
MDP0000286430
Malus x domestica
MDP0000286430
N
0.813
B9HKT4_POPTR
Populus trichocarpa
POPTR_0008s17030
N
0.777
GSVIVG00027891001
Vitis vinifera
GSVIVG00027891001
N
0.770
GRMZM2G167505
Zea mays
GRMZM2G167505
N
0.770
Cucsa.383370
Cucumis sativus
Cucsa.383370
N
0.770
Sb01g019610
Sorghum bicolor
Sb01g019610
N
0.763
AC198361.3_FG004
Zea mays
AC198361.3_FG004
N
0.763
LOC_Os10g33230
Oryza sativa
LOC_Os10g33230
N
0.763
GRMZM2G176918
Zea mays
GRMZM2G176918
N
0.763
ppa005309m
Prunus persica
ppa005309m
N
0.755
PK00513.1
Cannabis sativa
PK00513.1
N
0.741
MDP0000173934
Malus x domestica
MDP0000173934
N
0.734
Glyma10g33320.1
Glycine max
Glyma10g33320.1
N
0.727
MDP0000217366
Malus x domestica
MDP0000217366
N
0.727
Glyma18g09090.1
Glycine max
Glyma18g09090.1
N
0.727
Medtr3g076980
Medicago truncatula
Medtr3g076980
N
0.719
BRADI3G28430
Brachypodium distachyon
BRADI3G28430
N
0.719
SB02G005620
Sorghum bicolor
Sb02g005620
N
0.719
Glyma02g46650.1
Glycine max
Glyma02g46650.1
N
0.719
SB02G005670
Sorghum bicolor
Sb02g005670
N
0.719
Glyma20g34330.1
Glycine max
Glyma20g34330.1
N
0.712
gw1.3.93.1
Selaginella moellendorfii
gw1.3.93.1
N
0.712
GRMZM2G013065
Zea mays
GRMZM2G013065
N
0.712
MDP0000320618
Malus x domestica
MDP0000320618
N
0.712
Glyma08g43740.1
Glycine max
Glyma08g43740.1
N
0.712
cassava31392.valid.m1
Manihot esculenta
cassava31392.valid.m1
N
0.712
AT5G55550
Arabidopsis thaliana
AT5G55550-TAIR-G
N
0.712
Glyma14g02020.1
Glycine max
Glyma14g02020.1
N
0.712
27613.m000635
Ricinus communis
27613.m000635
N
0.712
B9GTG8_POPTR
Populus trichocarpa
POPTR_0002s22120
N
0.712
ppa005119m
Prunus persica
ppa005119m
N
0.705
MDP0000907782
Malus x domestica
MDP0000907782
N
0.705
MDP0000642684
Malus x domestica
MDP0000642684
N
0.705
Medtr5g105300
Medicago truncatula
Medtr5g105300
N
0.705
XM_002862650.1
Arabidopsis lyrata
fgenesh2_kg.8__1457__AT5G55550.1
N
0.705
ppa005132m
Prunus persica
ppa005132m
N
0.705
XM_002870277.1
Arabidopsis lyrata
fgenesh2_kg.7__2913__AT4G14300.1
N
0.702
chr2.LjT48A12.20.nd
Lotus japonicus
chr2.LjT48A12.20.nd
N
0.700