CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC_Os10g33230
(
Oryza sativa
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
LOC_Os10g33230
T45145_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os10g33230.1
RRM
8
76
LFIGGISWETTEEKLRDHFAAYGDVSQAAVMRDKLTGRPRGFGFVVFSDPSSVDAALVDPHTLDGRTVD
LOC_Os10g33230.1
RRM
130
199
IFVGGLPSNLTEDEFRQYFQTYGVVTDVVVMYDQNTQRPRGFGFITFDAEDAVDRVLHKTFHDLSGKMVE
Links
Other
RRM
family RBPs
Other
Oryza sativa
RBPs
32 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Sb01g019610
Sorghum bicolor
Sb01g019610
N
0.871
BRADI3G28430
Brachypodium distachyon
BRADI3G28430
N
0.863
AC198361.3_FG004
Zea mays
AC198361.3_FG004
N
0.856
GRMZM2G167505
Zea mays
GRMZM2G167505
N
0.856
GRMZM2G176918
Zea mays
GRMZM2G176918
N
0.856
30008.m000830
Ricinus communis
30008.m000830
N
0.784
cassava7388.valid.m1
Manihot esculenta
cassava7388.valid.m1
N
0.784
GSVIVG00028394001
Vitis vinifera
GSVIVG00028394001
N
0.777
cassava12601.valid.m1
Manihot esculenta
cassava12601.valid.m1
N
0.770
cassava12598.valid.m1
Manihot esculenta
cassava12598.valid.m1
N
0.770
cassava12600.valid.m1
Manihot esculenta
cassava12600.valid.m1
N
0.770
cassava12599.valid.m1
Manihot esculenta
cassava12599.valid.m1
N
0.770
B9GRF1_POPTR
Populus trichocarpa
POPTR_0002s26030
N
0.763
Cucsa.037090
Cucumis sativus
Cucsa.037090
N
0.763
B9IBE6_POPTR
Populus trichocarpa
POPTR_0014s18470
N
0.755
ppa005979m
Prunus persica
ppa005979m
N
0.748
PK00513.1
Cannabis sativa
PK00513.1
N
0.741
B9HKT4_POPTR
Populus trichocarpa
POPTR_0008s17030
N
0.741
B9HSS5_POPTR
Populus trichocarpa
POPTR_0010s07790
N
0.741
Glyma10g33320.1
Glycine max
Glyma10g33320.1
N
0.741
ppa005309m
Prunus persica
ppa005309m
N
0.741
MDP0000320861
Malus x domestica
MDP0000320861
N
0.734
Cucsa.383370
Cucumis sativus
Cucsa.383370
N
0.734
GSVIVG00027891001
Vitis vinifera
GSVIVG00027891001
N
0.734
Glyma20g34330.1
Glycine max
Glyma20g34330.1
N
0.727
XM_002870277.1
Arabidopsis lyrata
fgenesh2_kg.7__2913__AT4G14300.1
N
0.723
AT4G14300
Arabidopsis thaliana
AT4G14300-TAIR-G
N
0.723
MDP0000130865
Malus x domestica
MDP0000130865
N
0.719
MDP0000217366
Malus x domestica
MDP0000217366
N
0.719
gw1.3.93.1
Selaginella moellendorfii
gw1.3.93.1
N
0.712
MDP0000173934
Malus x domestica
MDP0000173934
N
0.712
MDP0000286430
Malus x domestica
MDP0000286430
N
0.712