GA28624-RA (Drosophila pseudoobscura)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0249984 T44415_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
bru-3
M117_0.6 		Drosophila melanogaster KUGKUGU RNAcompete
Ray et al.(2013)
RNCMPT00122 		0.971
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0287027 RRM 57 125
FBpp0287027 RRM 338 408

Links

Other RRM family RBPs
Other Drosophila pseudoobscura RBPs

64 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAEL014033 Aedes aegypti AAEL014033 I 0.893
AAEL000695 Aedes aegypti AAEL000695 I 0.714
CELF5 Anolis carolinensis ENSACAG00000016959 I 0.829
AGAP004950 Anopheles gambiae AGAP004950 I 0.893
amel4_ncbi_hmm7761 Apis mellifera amel4_ncbi_hmm7761 I 0.879
BGIBMGA010431 Bombyx mori BGIBMGA010431 I 0.700
Q2KI16_BOVIN Bos taurus ENSBTAG00000008937 I 0.736
estExt_fgenesh2_pm.C_730008 Branchiostoma floridae estExt_fgenesh2_pm.C_730008 I 0.721
CJA07020 Caenorhabditis japonica CJA07020 I 0.750
LOC100391960 Callithrix jacchus ENSCJAG00000020663 I 0.736
CELF5 Callithrix jacchus ENSCJAG00000014799 I 0.836
LOC100414308 Callithrix jacchus ENSCJAG00000018355 I 0.821
CELF5 Cavia porcellus ENSCPOG00000005740 I 0.836
CpipJ_CPIJ016329 Culex pipiens CpipJ_CPIJ016329 I 0.729
CPIJ016329 Culex quinquefasciatus CPIJ016329 I 0.729
GF10965 Drosophila ananassae FBgn0088005 I 0.971
GG13757 Drosophila erecta FBgn0106020 I 0.971
GH14684 Drosophila grimshawi FBgn0122160 I 0.964
bru-3 Drosophila melanogaster FBgn0262350 D 0.971
FBgn0262475 Drosophila melanogaster FBgn0262475 I 0.707
GI13095 Drosophila mojavensis FBgn0135852 I 0.964
GL21647 Drosophila persimilis FBgn0159240 I 0.979
GM24582 Drosophila sechellia FBgn0179445 I 0.971
GD12651 Drosophila simulans FBgn0184378 I 0.971
GJ13842 Drosophila virilis FBgn0201061 I 0.964
GK17101 Drosophila willistoni FBgn0219100 I 0.964
GE20053 Drosophila yakuba FBgn0237378 I 0.971
ENSFCAG00000007908 Felis catus ENSFCAG00000007908 N 0.714
A5A2G2_CHICK Gallus gallus ENSGALG00000002413 I 0.879
A5A2G4_CHICK Gallus gallus ENSGALG00000001966 I 0.864
CELF6 Gasterosteus aculeatus ENSGACG00000016626 I 0.857
CELF5 Gasterosteus aculeatus ENSGACG00000012870 I 0.864
ENSGGOG00000023049 Gorilla gorilla ENSGGOG00000023049 I 0.807
CELF5 Gorilla gorilla ENSGGOG00000002078 I 0.830
CELF2 Gorilla gorilla ENSGGOG00000009330 I 0.736
90208 Helobdella robusta 90208 I 0.794
62054 Helobdella robusta 62054 I 0.764
BRUNOL6 Homo sapiens ENSG00000140488 D 0.821
LOAG_05508 Loa loa LOAG_05508 I 0.814
estExt_fgenesh2_pg.C_sca_1310025 Lottia gigantea estExt_fgenesh2_pg.C_sca_1310025 I 0.757
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.871
CELF5 Macaca mulatta ENSMMUG00000015513 I 0.700
HEXA Macaca mulatta ENSMMUG00000010687 I 0.821
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.871
CELF5 Monodelphis domestica ENSMODG00000019151 I 0.836
Celf6 Mus musculus ENSMUSG00000032297 I 0.829
nasonia_NCBI_hmm496514 Nasonia vitripennis nasonia_NCBI_hmm496514 I 0.900
CELF5 Ochotona princeps ENSOPRG00000007881 I 0.807
CELF6 Ochotona princeps ENSOPRG00000019169 I 0.829
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.879
CELF2 Ornithorhynchus anatinus ENSOANG00000015432 I 0.736
CELF6 Oryzias latipes ENSORLG00000013392 I 0.857
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.821
PHUM315130 Pediculus humanus PHUM315130 I 0.914
Brunol4 Rattus norvegicus ENSRNOG00000014503 I 0.864
Sjc_0024790 Schistosoma japonicum Sjc_0024790 I 0.750
Smp_041280 Schistosoma mansoni Smp_041280 I 0.836
Smp_131780 Schistosoma mansoni Smp_131780 I 0.750
BRUNOL4 Taeniopygia guttata ENSTGUG00000001649 I 0.879
CELF3 Takifugu rubripes ENSTRUG00000012064 I 0.814
CELF6 Takifugu rubripes ENSTRUG00000012391 I 0.857
CELF5 Takifugu rubripes ENSTRUG00000017937 I 0.871
CELF5 Tetraodon nigroviridis ENSTNIG00000010634 I 0.871
CELF3 Tupaia belangeri ENSTBEG00000010130 I 0.729