CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_Genewise1Plus.C_570036
(
Neurospora tetrasperma
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
estExt_Genewise1Plus.C_570036
T51481_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1Plus.C_570036
RRM
195
265
IVIKNIPFNVRKEMLTQIMTDLGLPQPYAFNYHFDNGIFRGLAFANFQSPLDTQTVIEQLNGYEVQGRKLR
Links
Other
RRM
family RBPs
Other
Neurospora tetrasperma
RBPs
43 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
DGIL_AUG5s585g5t1
Acyrtosiphon pisum
DGIL_AUG5s585g5t1
N
0.000
Ame_R020475
Ailuropoda melanoleuca
Ame_R020475
N
0.000
Aqu1.226474
Amphimedon queenslandica
Aqu1.226474
N
0.000
PPIE
Anolis carolinensis
ENSACAG00000002688
N
0.000
amel4_ncbi_hmm1701
Apis mellifera
amel4_ncbi_hmm1701
N
0.000
amel4_ncbi_hmm44329
Apis mellifera
amel4_ncbi_hmm44329
N
0.000
BGIBMGA003414
Bombyx mori
BGIBMGA003414
N
0.000
estExt_gwp.C_5080019
Branchiostoma floridae
estExt_gwp.C_5080019
N
0.000
estExt_gwp.C_2960041
Branchiostoma floridae
estExt_gwp.C_2960041
N
0.000
Bm1_52100
Brugia malayi
Bm1_52100
N
0.000
CBN02296
Caenorhabditis brenneri
CBN02296
N
0.000
CBG00420
Caenorhabditis briggsae
CBG00420
N
0.000
cyn-13
Caenorhabditis elegans
Y116A8C.34
N
0.000
CJA08769
Caenorhabditis japonica
CJA08769
N
0.000
CRE28739
Caenorhabditis remanei
CRE28739
N
0.000
LOC100400545
Callithrix jacchus
ENSCJAG00000002589
N
0.000
PPIE
Canis familiaris
ENSCAFG00000003031
N
0.000
CAOG_01587
Capsaspora owczarzaki
CAOG_01587
N
0.000
PPIE
Cavia porcellus
ENSCPOG00000007365
N
0.000
ENSCING00000003116
Ciona intestinalis
ENSCING00000003116
N
0.000
ENSCSAVG00000006547
Ciona savignyi
ENSCSAVG00000006547
N
0.000
ppie
Danio rerio
ENSDARG00000059270
N
0.000
PPIE
Dasypus novemcinctus
ENSDNOG00000002404
N
0.000
LOC100054282
Equus caballus
ENSECAG00000024285
N
0.000
LOC100054084
Equus caballus
ENSECAG00000008955
N
0.000
PPIE
Erinaceus europaeus
ENSEEUG00000010232
N
0.000
PPIE
Felis catus
ENSFCAG00000006027
N
0.000
PPIE
Gallus gallus
ENSGALG00000013383
N
0.000
PPIE
Gasterosteus aculeatus
ENSGACG00000007165
N
0.000
PPIE
Gorilla gorilla
ENSGGOG00000015783
N
0.000
107863
Helobdella robusta
107863
N
0.000
PPIE
Homo sapiens
ENSG00000084072
N
0.000
XP_002154334.1
Hydra magnipapillata
XP_002154334.1
N
0.000
XP_002168022.1
Hydra magnipapillata
XP_002168022.1
N
0.000
ISCW002449
Ixodes scapularis
ISCW002449
N
0.000
LOAG_00807
Loa loa
LOAG_00807
N
0.000
estExt_fgenesh2_kg.C_sca_1160007
Lottia gigantea
estExt_fgenesh2_kg.C_sca_1160007
N
0.000
PPIE
Loxodonta africana
ENSLAFG00000028312
N
0.000
PPIE
Macaca mulatta
ENSMMUG00000018869
N
0.000
PPIE
Macropus eugenii
ENSMEUG00000005090
N
0.000
PPIE
Microcebus murinus
ENSMICG00000016676
N
0.000
PPIE
Monodelphis domestica
ENSMODG00000017659
N
0.000
Ppie
Mus musculus
ENSMUSG00000028651
N
0.000
PPIE
Myotis lucifugus
ENSMLUG00000016233
N
0.000
nasonia_NCBI_hmm78483
Nasonia vitripennis
nasonia_NCBI_hmm78483
N
0.000
PPIE
Ornithorhynchus anatinus
ENSOANG00000010003
N
0.000
PPIE
Oryctolagus cuniculus
ENSOCUG00000007665
N
0.000
PPIE
Oryzias latipes
ENSORLG00000017469
N
0.000
PPIE
Pan troglodytes
ENSPTRG00000000577
N
0.000
PHUM293600
Pediculus humanus
PHUM293600
N
0.000
ENSPPYG00000001501
Pongo pygmaeus
ENSPPYG00000001501
N
0.000
Ppa-cyn-13
Pristionchus pacificus
PPA01466
N
0.000
PPIE
Pteropus vampyrus
ENSPVAG00000002120
N
0.000
Ppie
Rattus norvegicus
ENSRNOG00000014762
N
0.000
PPIE
Sorex araneus
ENSSARG00000005703
N
0.000
PPIE
Spermophilus tridecemlineatus
ENSSTOG00000010445
N
0.000
XP_799104.2
Strongylocentrotus purpuratus
XP_799104.2
N
0.000
XP_001175534.1
Strongylocentrotus purpuratus
XP_001175534.1
N
0.000
PPIE
Sus scrofa
ENSSSCG00000003664
N
0.000
PPIE
Taeniopygia guttata
ENSTGUG00000001276
N
0.000
Q8QGJ6_FUGRU
Takifugu rubripes
ENSTRUG00000006308
N
0.000
PPIE
Tetraodon nigroviridis
ENSTNIG00000016901
N
0.000
amel4_ncbi_hmm1701
Tribolium castaneum
amel4_ncbi_hmm1701
N
0.000
estExt_fgeneshTA2_pm.C_70022
Trichoplax adhaerens
estExt_fgeneshTA2_pm.C_70022
N
0.000
PPIE
Tursiops truncatus
ENSTTRG00000014385
N
0.000
WUBG_08965
Wuchereria bancrofti
WUBG_08965
N
0.000
AAI23372
Xenopus laevis
AAI23372
N
0.000