estExt_gwp.C_1130042 (Nematostella vectensis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_gwp.C_1130042 T51581_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_gwp.C_1130042 RRM 7 77

Links

Other RRM family RBPs
Other Nematostella vectensis RBPs

67 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s585g5t1 Acyrtosiphon pisum DGIL_AUG5s585g5t1 N 0.732
Ame_R020475 Ailuropoda melanoleuca Ame_R020475 N 0.845
Aqu1.226474 Amphimedon queenslandica Aqu1.226474 N 0.732
PPIE Anolis carolinensis ENSACAG00000002688 N 0.859
amel4_ncbi_hmm1701 Apis mellifera amel4_ncbi_hmm1701 N 0.831
amel4_ncbi_hmm44329 Apis mellifera amel4_ncbi_hmm44329 N 0.803
BGIBMGA003414 Bombyx mori BGIBMGA003414 N 0.831
estExt_gwp.C_5080019 Branchiostoma floridae estExt_gwp.C_5080019 N 0.803
estExt_gwp.C_2960041 Branchiostoma floridae estExt_gwp.C_2960041 N 0.803
Bm1_52100 Brugia malayi Bm1_52100 N 0.732
CBN02296 Caenorhabditis brenneri CBN02296 N 0.761
CBG00420 Caenorhabditis briggsae CBG00420 N 0.732
cyn-13 Caenorhabditis elegans Y116A8C.34 N 0.732
CJA08769 Caenorhabditis japonica CJA08769 N 0.732
CRE28739 Caenorhabditis remanei CRE28739 N 0.746
LOC100400545 Callithrix jacchus ENSCJAG00000002589 N 0.873
PPIE Canis familiaris ENSCAFG00000003031 N 0.873
CAOG_01587 Capsaspora owczarzaki CAOG_01587 N 0.803
PPIE Cavia porcellus ENSCPOG00000007365 N 0.861
ENSCING00000003116 Ciona intestinalis ENSCING00000003116 N 0.761
ENSCSAVG00000006547 Ciona savignyi ENSCSAVG00000006547 N 0.746
ppie Danio rerio ENSDARG00000059270 N 0.873
PPIE Dasypus novemcinctus ENSDNOG00000002404 N 0.873
LOC100054282 Equus caballus ENSECAG00000024285 N 0.873
LOC100054084 Equus caballus ENSECAG00000008955 N 0.873
PPIE Erinaceus europaeus ENSEEUG00000010232 N 0.718
PPIE Felis catus ENSFCAG00000006027 N 0.831
PPIE Gallus gallus ENSGALG00000013383 N 0.887
PPIE Gasterosteus aculeatus ENSGACG00000007165 N 0.859
PPIE Gorilla gorilla ENSGGOG00000015783 N 0.873
107863 Helobdella robusta 107863 N 0.775
PPIE Homo sapiens ENSG00000084072 N 0.873
XP_002154334.1 Hydra magnipapillata XP_002154334.1 N 0.817
XP_002168022.1 Hydra magnipapillata XP_002168022.1 N 0.817
ISCW002449 Ixodes scapularis ISCW002449 N 0.845
LOAG_00807 Loa loa LOAG_00807 N 0.732
estExt_fgenesh2_kg.C_sca_1160007 Lottia gigantea estExt_fgenesh2_kg.C_sca_1160007 N 0.803
PPIE Loxodonta africana ENSLAFG00000028312 N 0.873
PPIE Macaca mulatta ENSMMUG00000018869 N 0.873
PPIE Macropus eugenii ENSMEUG00000005090 N 0.764
PPIE Microcebus murinus ENSMICG00000016676 N 0.873
PPIE Monodelphis domestica ENSMODG00000017659 N 0.887
Ppie Mus musculus ENSMUSG00000028651 N 0.873
PPIE Myotis lucifugus ENSMLUG00000016233 N 0.873
nasonia_NCBI_hmm78483 Nasonia vitripennis nasonia_NCBI_hmm78483 N 0.761
PPIE Ornithorhynchus anatinus ENSOANG00000010003 N 0.859
PPIE Oryctolagus cuniculus ENSOCUG00000007665 N 0.873
PPIE Oryzias latipes ENSORLG00000017469 N 0.887
PPIE Pan troglodytes ENSPTRG00000000577 N 0.873
PHUM293600 Pediculus humanus PHUM293600 N 0.803
ENSPPYG00000001501 Pongo pygmaeus ENSPPYG00000001501 N 0.845
Ppa-cyn-13 Pristionchus pacificus PPA01466 N 0.775
PPIE Pteropus vampyrus ENSPVAG00000002120 N 0.873
Ppie Rattus norvegicus ENSRNOG00000014762 N 0.873
PPIE Sorex araneus ENSSARG00000005703 N 0.873
PPIE Spermophilus tridecemlineatus ENSSTOG00000010445 N 0.718
XP_799104.2 Strongylocentrotus purpuratus XP_799104.2 N 0.845
XP_001175534.1 Strongylocentrotus purpuratus XP_001175534.1 N 0.845
PPIE Sus scrofa ENSSSCG00000003664 N 0.873
PPIE Taeniopygia guttata ENSTGUG00000001276 N 0.887
Q8QGJ6_FUGRU Takifugu rubripes ENSTRUG00000006308 N 0.831
PPIE Tetraodon nigroviridis ENSTNIG00000016901 N 0.831
amel4_ncbi_hmm1701 Tribolium castaneum amel4_ncbi_hmm1701 N 0.831
estExt_fgeneshTA2_pm.C_70022 Trichoplax adhaerens estExt_fgeneshTA2_pm.C_70022 N 0.803
PPIE Tursiops truncatus ENSTTRG00000014385 N 0.873
WUBG_08965 Wuchereria bancrofti WUBG_08965 N 0.732
AAI23372 Xenopus laevis AAI23372 N 0.845