fgenesh2_pg.C_sca_14000012 (Lottia gigantea)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_pg.C_sca_14000012 T52153_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Rbp9
M124_0.6 		Drosophila melanogaster UUDDGUU RNAcompete
Ray et al.(2013)
RNCMPT00132 		0.787
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.764
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.764
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.764
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.755
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.755
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.755
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.701
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.701
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.701
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.701
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.701
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.701
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.C_sca_14000012 RRM 31 101
fgenesh2_pg.C_sca_14000012 RRM 117 185
fgenesh2_pg.C_sca_14000012 RRM 274 344

Links

Other RRM family RBPs
Other Lottia gigantea RBPs

153 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.731
Ame_R010167 Ailuropoda melanoleuca Ame_R010167 I 0.701
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.755
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.764
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 0.755
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.764
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.718
AGAP000965 Anopheles gambiae AGAP000965 I 0.810
amel4_ncbi_hmm5219 Apis mellifera amel4_ncbi_hmm5219 I 0.844
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.764
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.731
Q3ZCE2_BOVIN Bos taurus ENSBTAG00000000613 I 0.701
fgenesh2_pg.scaffold_219000066 Branchiostoma floridae fgenesh2_pg.scaffold_219000066 I 0.788
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.764
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.755
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.755
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.764
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.731
ENSCAFG00000018353 Canis familiaris ENSCAFG00000018353 I 0.701
estExt_Genewise1Plus.C_1660036 Capitella teleta estExt_Genewise1Plus.C_1660036 I 0.797
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.764
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.755
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.764
ENSCSAVG00000003440 Ciona savignyi ENSCSAVG00000003440 I 0.717
CpipJ_CPIJ000395 Culex pipiens CpipJ_CPIJ000395 I 0.768
CpipJ_CPIJ016143 Culex pipiens CpipJ_CPIJ016143 I 0.807
CPIJ000395 Culex quinquefasciatus CPIJ000395 I 0.768
CPIJ016143 Culex quinquefasciatus CPIJ016143 I 0.807
elavl4 Danio rerio ENSDARG00000045639 I 0.757
elavl2 Danio rerio ENSDARG00000040732 I 0.745
elavl3 Danio rerio ENSDARG00000014420 I 0.731
fgenesh1_pg.C_scaffold_8000205 Daphnia pulex fgenesh1_pg.C_scaffold_8000205 I 0.797
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 0.764
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.755
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.764
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.726
GF14992 Drosophila ananassae FBgn0092017 I 0.782
GG24901 Drosophila erecta FBgn0117030 I 0.782
GH13638 Drosophila grimshawi FBgn0121114 I 0.801
Rbp9 Drosophila melanogaster FBgn0010263 D 0.806
GI11879 Drosophila mojavensis FBgn0134637 I 0.782
GL26299 Drosophila persimilis FBgn0163881 I 0.801
GA28809-RA Drosophila pseudoobscura FBgn0250168 I 0.782
GM18380 Drosophila sechellia FBgn0173287 I 0.782
GJ13991 Drosophila virilis FBgn0201209 I 0.782
GK14865 Drosophila willistoni FBgn0216870 I 0.782
GE18193 Drosophila yakuba FBgn0235624 I 0.782
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.755
ELAVL2 Equus caballus ENSECAG00000020142 I 0.755
LOC100051268 Equus caballus ENSECAG00000022284 I 0.764
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.764
ELAVL1 Felis catus ENSFCAG00000014947 I 0.701
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.741
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.764
Q9PW24_CHICK Gallus gallus ENSGALG00000000726 I 0.706
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.759
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.731
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.741
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.731
ELAVL1 Gorilla gorilla ENSGGOG00000006100 I 0.701
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.764
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.755
187316 Helobdella robusta 187316 N 0.716
185541 Helobdella robusta 185541 I 0.725
ELAVL3 Homo sapiens ENSG00000196361 I 0.731
ELAVL2 Homo sapiens ENSG00000107105 D 0.755
ELAVL1 Homo sapiens ENSG00000066044 D 0.701
ELAVL4 Homo sapiens ENSG00000162374 D 0.764
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.764
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.731
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.755
ELAVL1 Loxodonta africana ENSLAFG00000004219 I 0.701
ELAVL1 Macaca mulatta ENSMMUG00000006544 I 0.701
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.755
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.764
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.718
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.764
ELAVL1 Meleagris gallopavo ENSMGAG00000001015 I 0.706
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.761
ELAVL1 Microcebus murinus ENSMICG00000009699 I 0.701
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.764
ELAVL1 Monodelphis domestica ENSMODG00000005041 I 0.701
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 0.755
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.764
Elavl4 Mus musculus ENSMUSG00000028546 I 0.764
Elavl3 Mus musculus ENSMUSG00000003410 I 0.731
Elavl2 Mus musculus ENSMUSG00000008489 I 0.755
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.750
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.764
ELAVL1 Myotis lucifugus ENSMLUG00000008101 I 0.706
nasonia_NCBI_hmm330804 Nasonia vitripennis nasonia_NCBI_hmm330804 I 0.844
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.764
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.755
ELAVL1 Ochotona princeps ENSOPRG00000009691 I 0.701
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.764
D7R608_RABIT Oryctolagus cuniculus ENSOCUG00000015871 I 0.701
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.755
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.759
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.745
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.724
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.731
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.764
ELAVL1 Otolemur garnettii ENSOGAG00000012877 I 0.701
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.755
ELAVL3 Pan troglodytes ENSPTRG00000010506 I 0.708
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.764
ELAVL1 Pan troglodytes ENSPTRG00000010413 I 0.701
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.764
ENSPPYG00000009496 Pongo pygmaeus ENSPPYG00000009496 I 0.701
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.755
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.764
ELAVL2 Procavia capensis ENSPCAG00000014998 I 0.703
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.755
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.731
ELAVL4 Pteropus vampyrus ENSPVAG00000003632 I 0.703
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.731
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.755
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.764
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.755
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.764
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.731
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.755
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.736
ELAVL1 Taeniopygia guttata ENSTGUG00000000118 I 0.706
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.764
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.755
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.744
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.731
ELAVL1 Tarsius syrichta ENSTSYG00000008248 I 0.701
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.764
ELAVL2 Tarsius syrichta ENSTSYG00000013066 I 0.722
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.741
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.721
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 0.755
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.755
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.731
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.755
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.764
AAI69769 Xenopus laevis AAI69769 I 0.718
AAI70539 Xenopus laevis AAI70539 I 0.755
CAA59430 Xenopus laevis CAA59430 I 0.746
CBF67567 Xenopus laevis CBF67567 I 0.759
Q91584 Xenopus laevis Q91584 I 0.718
CBU92440 Xenopus laevis CBU92440 I 0.759
AAH99348 Xenopus laevis AAH99348 I 0.759
AAH94189 Xenopus laevis AAH94189 I 0.755
AAA96945 Xenopus laevis AAA96945 I 0.759
AAA96944 Xenopus laevis AAA96944 I 0.718
AAA96943 Xenopus laevis AAA96943 I 0.751
AAA96942 Xenopus laevis AAA96942 I 0.701
Q91903 Xenopus laevis Q91903 I 0.751
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.759
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.715